Input parameters:

  Query = EG_PFL1975c (Len=468)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL1975c, Len=468):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFNDDQNANNYFPTKLGIDRPAIDFTSSVCNFLKNDVYKRQFERKLYVNHPIYLRRIKPLFCYSNMIDRYDGVMSHLACS 80  
WD40-rpts      (_____________WD 1____________)  (_________________WD 2________________)   (____

Query       81 CLNKSKGMIVSLKWFNDGKRLLTGTQLSELCIWNGSYFNFEDMKRIPIGGGSVSCLEWSKNDNLFAGNSLGQIVILSSAL 160 
WD40-rpts      _____________WD 3________________)     (_________________WD 4________________)  

Query      161 NLLDNYAFEGLTKNVLDISLSCCNTKLAGCADTCNPIIWDIKTRKVIKDLKCKNIDTNNISCLAWNPINDIVASGNRTHT 240 
WD40-rpts       (_________________WD 5________________)   (__________________WD 6______________

Query      241 ISFWDIRMNKPIISLNSHKANVNKIKWNNNGIYLLSCSKDSLIKLWDIRNFKLLYSYKNDQIQNNKFTSNYEPTYIAWNP 320 
WD40-rpts      ____)   (_________________WD 7________________)           (__________________WD 

Query      321 IQNHIFSSADNKGNIKFYSTNDNKCIQTIVSAHGIDNKISSISLLDWNPLGHILTSFGDDKLLKFWSTSSSGSIYSKEID 400 
WD40-rpts      8_________________)   (____________________WD 9___________________)   (_________

Query      401 AKSLVHVTNSGVFPNSRYINDEYMLDVNSNQSISDSDENDYQQNILNNNYYKVVDKKKKKKVKKKIKK 468 
WD40-rpts      ______WD10_______________)                                          

10 WD40-repeats found in QUERY=EG_PFL1975c (Len=468):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-31       4.33  293.71  0.00684       10.0%      2.09
  WD 2:  Seg  2    34-72       6.33  376.19  0.00053       10.0%     30.60
  WD 3:  Seg  5    76-114      8.78  477.21  2.3e-05       22.5%     51.33
  WD 4:  Seg  9   120-158      7.70  432.75  9.2e-05       10.0%     51.36
  WD 5:  Seg 13   162-200      8.52  466.62  3.2e-05       20.0%     53.86
  WD 6:  Seg 17   204-245      7.94  442.48  6.8e-05       22.5%     55.15
  WD 7:  Seg 21   249-287      9.68  514.50  7.2e-06       30.0%     56.70
  WD 8:  Seg 26   299-339      6.67  390.22  0.00034       15.0%     44.02
  WD 9:  Seg 29   343-387      8.01  445.53  6.2e-05       25.0%     55.97
  WD10:  Seg 33   391-426      5.30  333.76  0.00198        7.5%     32.23

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-31     ---------------MF---NDDQNANNYFPTKLGI-DRPAIDFTSSVCN
   WD 2   34-72     KNDVYKRQ------FER---KLYVNHPIYLRRIKPL-FCYS-NMIDRYDG
   WD 3   76-114    -HLACSCL------NKS---KGMIVSLKWFNDGKRL-LTGTQLSELCIWN
   WD 4  120-158    -FEDMKRI------PIG---GGSVSCLEWSKNDNLF-AGNSLGQIVILSS
   WD 5  162-200    -LLDNYAF------EGL---TKNVLDISLSCCNTKL-AGCADTCNPIIWD
   WD 6  204-245    -RKVIKDL------KCKNIDTNNISCLAWNPINDIV-ASGNRTHTISFWD
   WD 7  249-287    -NKPIISL------NSH---KANVNKIKWNNNGIYL-LSCSKDSLIKLWD
   WD 8  299-339    NDQIQNNK------FTS---NYEPTYIAWNPIQNHIFSSADNKGNIKFYS
   WD 9  343-387    -NKCIQTIVSAHGIDNK---ISSISLLDWNPLGHIL-TSFGDDKLLKFWS
   WD10  391-426    -SGSIYSK------EID---AKSLVHVTNSGVF----PNSRYINDEYMLD

   WD40 Template    TGECLRTL------SGH---TSGVTSVSFSPDGKRL-VSGSEDGTIKVWD