Input parameters:

  Query = EG_PFL2105c (Len=370)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL2105c, Len=370):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNSILYKKIKLTDDAVKNFNVIRAFKYKQSITKNISWSCDGELLLASNGNDSITLYSLIKGNNIKTLYSKKSGVDVVRFL 80  
WD40-rpts                        (_________________WD 1________________)   (___________________

Query       81 NNTNEVIICSTKSNNTEHKQFLRFWDIKENKYIKSLPQIGNICELNGISINYNKKLMLVNSDDGHVKLYYFNCDSPLILY 160 
WD40-rpts      _WD 2____________________)(___________________WD 3___________________)   (______

Query      161 KSNFVRPVSCFDNEGHIFIASYGKKEIHFYDLLMYDRGEYNIIDLKNIMTNEEFITNLFFTPDNKYIIISTNHNNHYKID 240 
WD40-rpts      __________WD 4________________)          (_________________WD 5________________)

Query      241 SITGTYICTYKYPRSENQQWDMSNTTKDIINQYTYSQTNDKLQQTLNNTNEKNIYFQNRNDMFFMPTITPDGHYVMCGGK 320 
WD40-rpts         (___________________WD 6___________________)  (_________________WD 7_________

Query      321 DAGIHIWSEGGNHVTTLYGHEGPPNNVSFNPKCSVLASSCLNIALWQPSL 370 
WD40-rpts      _______)  (________________WD 8_______________)   

8 WD40-repeats found in QUERY=EG_PFL2105c (Len=370):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    19-57       8.63  471.08  2.8e-05       20.0%     54.99
  WD 2:  Seg  6    61-106      7.46  423.02  0.00012       27.5%     55.56
  WD 3:  Seg 10   107-150      7.90  440.92  7.1e-05       20.0%     53.65
  WD 4:  Seg 14   154-191      6.19  370.32  0.00064       12.5%     54.88
  WD 5:  Seg 18   202-240      7.96  443.61  6.5e-05       17.5%     53.36
  WD 6:  Seg 22   244-287      6.43  380.46  0.00046       12.5%     49.83
  WD 7:  Seg 26   290-328      8.59  469.56  2.9e-05       20.0%     53.97
  WD 8:  Seg 30   331-367      7.48  423.75  0.00012       32.5%     48.27

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   19-57     -FN----VIRAFKYKQS-----ITKNISWSCDGELLLASN-------GNDSITLYS
   WD 2   61-106    -GN----NIKTLYSKKS-----GVDVVRFLNNTNEVIICSTKSNNTEHKQFLRFWD
   WD 3  107-150    IKENKYIKSLPQIGNIC-----ELNGISINYNKKLMLVNS-------DDGHVKLYY
   WD 4  154-191    -DS----PLILYKSNFV-----RPV-SCFDNEGHIFIASY-------GKKEIHFYD
   WD 5  202-240    -II----DLKNIMTNEE-----FITNLFFTPDNKYIIIST-------NHNNHYKID
   WD 6  244-287    -GT----YICTYKYPRSENQQWDMSNTTKDIINQYTYSQT-------NDKLQQTLN
   WD 7  290-328    -NE----KNIYFQNRND-----MFFMPTITPDGHYVMCGG-------KDAGIHIWS
   WD 8  331-367    -GN----HVTTLYGHEG-----PPNNVSFNPKCSVLASSC-------LN--IALWQ

   WD40 Template    TGE----CLRTLSGHTS-----GVTSVSFSPDGKRLVSGS-------EDGTIKVWD