Input parameters:

  Query = YAR003W (Len=426)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YAR003W, Len=426):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNILLQDPFAVLKEHPEKLTHTIENPLRTECLQFSPCGDYLALGCANGALVIYDMDTFRPICVPGNMLGAHVRPITSIAW 80  
WD40-rpts                     (_________________WD 1________________)        (________________W

Query       81 SPDGRLLLTSSRDWSIKLWDLSKPSKPLKEIRFDSPIWGCQWLDAKRRLCVATIFEESDAYVIDFSNDPVASLLSKSDEK 160 
WD40-rpts      D 2________________)           (___________________WD 3___________________)   (_

Query      161 QLSSTPDHGYVLVCTVHTKHPNIIIVGTSKGWLDFYKFHSLYQTECIHSLKITSSNIKHLIVSQNGERLAINCSDRTIRQ 240 
WD40-rpts      ________________WD 4________________)      (_________________WD 5_______________

Query      241 YEISIDDENSAVELTLEHKYQDVINKLQWNCILFSNNTAEYLVASTHGSSAHELYIWETTSGTLVRVLEGAEEELIDINW 320 
WD40-rpts      _)              (__________________WD 6__________________)   (_________________W

Query      321 DFYSMSIVSNGFESGNVYVWSVVIPPKWSALAPDFEEVEENVDYLEKEDEFDEVDEAEQQQGLEQEEEIAIDLRTREQYD 400 
WD40-rpts      D 7_________________)                                                           

Query      401 VRGNNLLVERFTIPTDYTRIIKMQSS 426 
WD40-rpts                                

7 WD40-repeats found in QUERY=YAR003W (Len=426):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    16-54       8.26  455.96  4.5e-05       25.0%     51.65
  WD 2:  Seg  6    63-100      9.82  520.38  6.0e-06       37.5%     44.56
  WD 3:  Seg 10   112-155      6.75  393.28  0.00031       10.0%     49.08
  WD 4:  Seg 14   159-197      8.09  448.77  5.6e-05       10.0%     54.37
  WD 5:  Seg 18   204-242      9.06  489.05  1.6e-05       27.5%     54.43
  WD 6:  Seg 23   257-298      5.15  327.25  0.00242       12.5%     41.27
  WD 7:  Seg 27   302-341      8.17  452.15  5.0e-05       27.5%     53.47

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-54     -PEK----LTHTIENPLRTECLQFSPCGDYLA----L-GCANGALVIYD
   WD 2   63-100    --VP----GNMLGAHVRPITSIAWSPDGRLLL----T-SSRDWSIKLWD
   WD 3  112-155    RFDSPIWGCQWLDAKRRLCVATIFEESDAYVI----D-FSNDPVASLLS
   WD 4  159-197    -EKQ----LSSTPDHGYVLVCTVHTKHPNIII----V-GTSKGWLDFYK
   WD 5  204-242    -TEC----IHSLKITSSNIKHLIVSQNGERLA----I-NCSDRTIRQYE
   WD 6  257-298    EHKY----QDVI--NKLQWNCILFSNNTAEYLVASTH-GSSAHELYIWE
   WD 7  302-341    -GTL----VRVLEGAEEELIDINWDFYSMSIV----SNGFESGNVYVWS

   WD40 Template    TGEC----LRTLSGHTSGVTSVSFSPDGKRLV----S-GSEDGTIKVWD