Input parameters:
Query = YAR070C (Len=99)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (YAR070C, Len=99):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MYKITTIYLWQKSYLSFFIGIDNLDCFTLIRFFQCRLQNKLGLQDILDFFCNLCGHSMVRTCNMVEAAQKQNRITFGSIY 80
WD40-rpts (_____________________________________________WD 1______________________________
Query 81 VKLHPLVKLCTGIVWAPRV 99
WD40-rpts _______________)
1 WD40-repeats found in QUERY=YAR070C (Len=99):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-96 3.02 239.51 0.03624 15.0% 20.52
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-96 MYKITTIYLWQKSYLSFFIGIDNLDCFTLIRFFQCRLQNKLGLQDILDFFCNLCGHSMVRTCNMVEAAQKQNRITFGSIYVKLHPLVKLCTGIVWA
WD40 Template TGECLR----------TLSGHTSGV-------------TSVS-----------FSPD-------------GKRLVSGSEDGTIK---------VWD