Input parameters:
Query = YAR075W (Len=157)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (YAR075W, Len=157):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVVFKNIGHIITKALALGSSTVMMGGMLAGTTESPGEYLYQDGKRLKAYRGMGSIDAMQKTGTKGNASTSRYFSESDSVL 80
WD40-rpts (_______________________WD 1___________
Query 81 VAQGVSGAVVDKGSIKKFIPYLYNGLQHSCQDIGCRSLTLLKENVQSGKVRFEFRTASAQLEGGVNNLHSYEKRLHN 157
WD40-rpts ____________)
1 WD40-repeats found in QUERY=YAR075W (Len=157):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 4 42-93 2.91 234.73 0.04192 27.5% 19.27
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 42-93 DGKRLKAYRGMGSIDAMQKTGTKGNASTSRYFSESDSVLVAQGVSGAVVDKG
WD40 Template TGECLRTLSGHTS------------GVTSVSFSPDGKRLVSGSEDGTIKVWD