Input parameters:

  Query = YBL008W (Len=840)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YBL008W, Len=840):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVVKFPWLAHREESRKYEIYTVDVSHDGKRLATGGLDGKIRIWSIDSILRCMELESLTPEIPLPQDLQMPLCSMSRHTG 80  
WD40-rpts           (_________________WD 1_________________)                       (___________

Query       81 SITCVKFSPDGKYLASGSDDRILLIWALDEEQSSQPAFGSEHEREHWTVRKRLVAHDNDIQDICWAPDSSILVTVGLDRS 160 
WD40-rpts      ______WD 2________________)(__________________________WD 3______________________

Query      161 VIVWNGSTFEKLKRFDVHQSLVKGVVFDPANKYFATTSDDRTMKIFRYHKTGDISFTIEHIITEPFKESPLTTYFRRPSW 240 
WD40-rpts      ____)   (_________________WD 4________________)                (________________

Query      241 SPDGQHIAVPNATNGPVSSMAIVNRGTWDTNVSLIGHDAPTEVARFNPRLFERNAGVKQKKDDDPENALVGQNDDKVHHF 320 
WD40-rpts      __WD 5_________________)   (_________________WD 6________________)(_____________

Query      321 DKNIDSVVATAGQDKSLAVWSTSRPRPILVAFDIANKSITDMSWNPDGSLLFVASLDSSITLFKFENNELGKPIPLEKNM 400 
WD40-rpts      __WD 7______________)(___________________WD 8__________________)   (____________

Query      401 EQLYRYGVDKDSLDFPESINQLLLEDQTKSFKHTKISTSKLGENHPTLATNSASNQKDNNDASVSRSEHINILIPKRKKD 480 
WD40-rpts      _____WD 9________________)   (_________________WD10________________)            

Query      481 AILNKAVTLKSGKKRVAPTLISTSSSSPFSNGIKKPTLDSKRIENNVKSSTKTINSKNTLLNVPEGVEKKISISSFPLPR 560 
WD40-rpts                                          (_________________WD11________________)     

Query      561 LGIHSLIMGTKERSAWKISNSELENDDADNAGGKGSDGTSNSIDDIAVLSEEENDFHRMTLNAKLTQEKIWSEEPTTRCL 640 
WD40-rpts                                                                                      

Query      641 LQSDVIPDTDVVVLEGGSLDDIAVLEIRNGVERSIQFDSEALLDNPTRILGYQGGKRTIETFIPEVIICAIGSKDCKCWC 720 
WD40-rpts                                                           (_________________WD12_____

Query      721 LASANGSIYILSYNGQQRIPKICLGHKVIKMVTSSKYLLVLTERGLFFAWDLLDLKLVLRNVPILPILNGQPIHGNKVRI 800 
WD40-rpts      ___________)(_________________WD13________________)                             

Query      801 NKVIKCFRLDGSSCDLLLEVGDPKNVYKWTKDLGCWSLYK 840 
WD40-rpts                                              

13 WD40-repeats found in QUERY=YBL008W (Len=840):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     6-45       9.84  521.26  5.9e-06       30.0%     54.62
  WD 2:  Seg  6    69-107      8.86  480.64  2.1e-05       45.0%     47.63
  WD 3:  Seg  9   108-165      7.69  432.39  9.3e-05       25.0%     56.72
  WD 4:  Seg 13   169-207      8.90  482.24  2.0e-05       32.5%     57.53
  WD 5:  Seg 18   224-264      4.93  318.36  0.00319       17.5%     46.54
  WD 6:  Seg 21   268-306      5.13  326.49  0.00248       15.0%     27.11
  WD 7:  Seg 24   307-341      6.74  393.05  0.00031       12.5%     46.42
  WD 8:  Seg 27   342-384      8.11  449.77  5.4e-05       27.5%     58.10
  WD 9:  Seg 31   388-426      6.54  385.01  0.00040       10.0%     45.99
  WD10:  Seg 35   430-468      5.63  347.19  0.00130        7.5%      7.39
  WD11:  Seg 38   517-555      4.08  283.38  0.00941       10.0%     -0.79
  WD12:  Seg 43   694-732      6.25  372.90  0.00059       17.5%     55.04
  WD13:  Seg 47   733-771      4.92  317.83  0.00324       17.5%     41.21

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-45     FP---W------------------LAHREESRKYEIYTVDVSHDGKRLATGGLDG----KIRIWS
   WD 2   69-107    -Q---M------------------PLCSMSRHTGSITCVKFSPDGKYLASGSDDR----ILLIWA
   WD 3  108-165    LD---EEQSSQPAFGSEHEREHWTVRKRLVAHDNDIQDICWAPDSSILVTVGLDR----SVIVWN
   WD 4  169-207    -F---E------------------KLKRFDVHQSLVKGVVFDPANKYFATTSDDR----TMKIFR
   WD 5  224-264    EP------------------------FKESPLTTYFRRPSWSPDGQHIAVPNATNGPVSSMAIVN
   WD 6  268-306    -W---D------------------TNVSLIGHDAPTEVARFNPRLFERNAGVKQK----KDDDPE
   WD 7  307-341    --------------------------NALVGQNDDKVHHFDKNIDSVVATAGQDK----SLAVWS
   WD 8  342-384    TSRPRP------------------ILVAFDIANKSITDMSWNPDGSLLFVASLDS----SITLFK
   WD 9  388-426    -N---E------------------LGKPIPLEKNMEQLYRYGVDKDSLDFPESIN----QLLLED
   WD10  430-468    -S---F------------------KHTKISTSKLGENHPTLATNSASNQKDNNDA----SVSRSE
   WD11  517-555    -T---L------------------DSKRIENNVKSSTKTINSKNTLLNVPEGVEK----KISISS
   WD12  694-732    GG---K------------------RTIET-FIPEVIICAIGSKDCKCWCLASANG----SIYILS
   WD13  733-771    -Y---N------------------GQQRIPKICLGHKVIKMVTSSKYLLVLTERG----LFFAWD

   WD40 Template    TG---E------------------CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDG----TIKVWD