Input parameters:
Query = YBL104C (Len=1038)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (YBL104C, Len=1038):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGLIKKVTHWSYDNLIDYLSVNPTRDEVTHYKVDPENESDESIIKLHTVKDFGSITCLDYSESEIGMIGVGEKNGYLRIF 80
WD40-rpts
Query 81 NISGQNSSSPASHAPVGLNANNETSMTNASGGKAAQAENIVGSVSNLKDTQGYPVSETNYDIRVRAKKQRCINSLGINTN 160
WD40-rpts (__________________________WD 1______
Query 161 GLIAMGLDRNKHDSSLQIWDMNYHDDSHETINPMFSYCTNESIVSLKFLNDTSVLAASTKFLKEIDVRSPNPIYQHPTRL 240
WD40-rpts ___________________) (_____________
Query 241 TYDIKLNPFNDWQFSTYGDDGTLAIWDRRKLSDQASLGDLNVASPLLTFEKLVGSGAASRKYMNSCFRWSCVRNNEFATL 320
WD40-rpts _____WD 2_________________)
Query 321 HRGDTIKRWRLGYYCDSNRDIAADDDNEMNIENLFVSSVHDTNTMYDRVATFDYIPRSNNGTSLICMRQSGTIYRMPISE 400
WD40-rpts (____________
Query 401 VCSKAILNNRNSLLLSNFENTEIDEIRVNNEHEKSNLENVKTILKNLSFEDLDVSEDYFPSGHDEPNNEIEYSELSEEEN 480
WD40-rpts _____WD 3_________________)
Query 481 EGSNDVLDSKRGFELFWKPEKLLEKDISVIMRTRASLGYGLDPMNTVEMIDSSKNLQNNAYIRNTWRWIAIAKASVDDGT 560
WD40-rpts
Query 561 MVSGDLDLGYEGVIGIWNGINGISNQDRYRQETILSDKQLNKEMEKIIKLRRKNRDRNSPIANAAGSPKYVQRRLCLIIS 640
WD40-rpts
Query 641 GWDLSRSDYEDKYNIIMKNGHYEKAAAWAVFFGDIPKAVEILGSAKKERLRLIATAIAGYLAYKDLPGNNAWRQQCRKMS 720
WD40-rpts
Query 721 SELDDPYLRVIFAFIADNDWWDILYEPAISLRERLGVALRFLNDTDLTTFLDRTSSTVIENGELEGLILTGITPNGIDLL 800
WD40-rpts
Query 801 QSYVNKTSDVQSAALISIFGSPRYFRDQRVDEWIQTYRDMLKSWELFSMRARFDVLRSKLSRTKTGVLTADIKPRQIYIQ 880
WD40-rpts
Query 881 CQNCKQNINTPRTSSPSSAVSTSAGNYKNGEAYRRNNADYKKFNTGSSEAQAADEKPRHKYCCPHCGSSFPRCAICLMPL 960
WD40-rpts
Query 961 GTSNLPFVINGTQSRDPMQTEDSQDGANRELVSRKLKLNEWFSFCLSCNHGMHAGHAEEWFDRHNVCPTPGCTCQCNK 1038
WD40-rpts
3 WD40-repeats found in QUERY=YBL104C (Len=1038):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 7 124-180 3.46 257.67 0.02078 17.5% 31.23
WD 2: Seg 14 227-267 5.73 351.30 0.00115 17.5% 41.46
WD 3: Seg 24 388-427 3.08 241.74 0.03385 10.0% 21.14
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 124-180 VSNLKDTQGYPVSETNYDIRVRAKKQRCINSLGINT-NGLIAMGLDRNKHDSSLQIWD
WD 2 227-267 VRSP--------------NPIYQHPTRLTYDIKLNPFNDWQ---FSTYGDDGTLAIWD
WD 3 388-427 RQSG--------------TIYRMPISEVCSKAILNN-RNSL---LLSNFENTEIDEIR
WD40 Template TGEC--------------LRTLSGHTSGVTSVSFSP-DGKR---LVSGSEDGTIKVWD