Input parameters:

  Query = YBL106C (Len=1010)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YBL106C, Len=1010):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFKKSRHLKNVSNAIKSARVHDVSNGINSKFFDTKKICTYGINGRITVTTFDYTQSLLAVATTAGEIHVYGQKQIEVVFT 80  
WD40-rpts                      (_________________________WD 1________________________)(________

Query       81 LKNRPQIKHMRFIKGIYLIAVDEKSNIIVLSVHSKQILTTVFCPNSITCFETDPPLDWMLIGLESGSILIYDVDRNQMSK 160 
WD40-rpts      _________WD 2_________________)  (_________________WD 3________________)        

Query      161 LKIENFQKSVFLPKERLSPVISIQWNPRDIGTILISYEHITVIYSFIDYKVKQHFFYQLEPYAPGGDLSTNIEKKRTPKV 240 
WD40-rpts         (__________________WD 4__________________)                     (_____________

Query      241 IQSLYHPNSLHILTVHEDNALVFWDVNSGKLIHARSIFETHVNFPNPALKDCSFTETPAIFKVSWLCQRNPEYTSLLIAT 320 
WD40-rpts      ____WD 5________________)                                                       

Query      321 KATENPCLPQEITMIDLGGTPMYSVTSFDAMSKYYAKPVQQKLFSLIGKAPLINFLPLPKASPYFGGCHDTNLILLLLED 400 
WD40-rpts                                          (__________________WD 6_________________)   

Query      401 GELETLIYPAGSFSSKASIFPRSLAWVRPTVTTCIAQSVQKNLWLGMMTIAQSESFLKGGIPATRNIRRHETRSALLTGH 480 
WD40-rpts                                          (________________________WD 7_______________

Query      481 SNGSVRIWDASHSEVTDNAVFEVNTAKVLNRATNLAIKNISFASETLELAVSSEVGDVILFKFETNKFYGQLPKSDALQL 560 
WD40-rpts      ________)(________________________WD 8_______________________)                  

Query      561 KFSRFSLDDSKTILVDVSDRGPTNVKQGFIPSTVIHAKKGAVSAIMNSNIGFVAVGFIEGTLIILDRRGPAIIFNENIRV 640 
WD40-rpts                     (_______________________WD 9______________________)              

Query      641 ISKAGSSYVSTVHFCVMEYGDDGFSSILMLCGTDIGELMTFKILPATNGRFEVKFTDATKTNNQGKILGINSFAKDTGYS 720 
WD40-rpts                                                                                      

Query      721 CSATISKMQGLSKGIAIPGFVTISGANDIRLVSPGKSKDTHALFKYPIATSGLSFIPIIDGKGERKLSTIMIVLLINGDI 800 
WD40-rpts                                                                                      

Query      801 KVLTVPELKEVKNLRCPVPLSAQYVENSSILENVDIVIRTGKFQASLISVLNESATGSNHTADISQHTPIDTLYNPDLKI 880 
WD40-rpts                                                                                      

Query      881 GYRPQVNSLQWARGTIYCTPYQLDELLGGIERPESKYEESAIARGCISSSSSNAARKLPPGTKDHRYARPVRSSGRSNGY 960 
WD40-rpts                                                                                      

Query      961 GVLKSVSRAIETRLDTVETTINDYATTMGQTMNDAMEETGRDMMKSAVGF 1010
WD40-rpts                                                        

9 WD40-repeats found in QUERY=YBL106C (Len=1010):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    17-71       4.40  296.38  0.00629       17.5%     48.92
  WD 2:  Seg  5    72-111      3.18  245.84  0.02988       12.5%     54.23
  WD 3:  Seg  9   114-152      5.34  335.19  0.00189       20.0%     56.22
  WD 4:  Seg 14   164-205      4.60  304.69  0.00487       12.5%     40.23
  WD 5:  Seg 19   227-265      6.07  365.49  0.00074       17.5%     47.41
  WD 6:  Seg 27   357-397      3.26  249.42  0.02677       10.0%     32.74
  WD 7:  Seg 32   437-489      6.56  385.72  0.00039       15.0%     34.83
  WD 8:  Seg 35   490-542      4.67  307.46  0.00447       17.5%     50.73
  WD 9:  Seg 40   576-626      3.30  250.98  0.02552       17.5%     49.90

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   17-71     SA--R------------VHDVSNGINSKFFDTKKICT----Y-------------G-INGRITVTTFDYTQSLLAVATTAGEIHVYG
   WD 2   72-111    QK--Q------------I---------------EVVF----T-------------L-KNRPQIKHMRFIKGIYLIAVDEKSNIIVLS
   WD 3  114-152    -S--K------------Q---------------ILTT----V-------------F-CPNSITCFETDPPLDWMLIGLESGSILIYD
   WD 4  164-205    ENFQK------------S---------------VFLP----K-------------E-RLSPVISIQWNPRDIGTILISYEHITVIYS
   WD 5  227-265    -D--L------------S---------------TNIE----K-------------K-RTPKVIQSLYHPNSLHILTVHEDNALVFWD
   WD 6  357-397    KP--V------------Q---------------QKLF----S-------------LIGKAPLINFLPLPKASPYFGGCHDTNLILLL
   WD 7  437-489    QS--V------------Q---------------KNLW----LGMMTIAQSESFLKG-GIPATRNIRRHETRSALLTGHSNGSVRIWD
   WD 8  490-542    AS--H------------S------EVTDNAVFEVNTAKVLNR-------------A-TNLAIKNISFASETLELAVSSEVGDVILFK
   WD 9  576-626    DV--SDRGPTNVKQGFIP---------------STVI----H-------------A-KKGAVSAIMNSNIG-FVAVGFIEGTLIILD

   WD40 Template    TG--E------------C---------------LRTL----S-------------G-HTSGVTSVSFSPDGKRLVSGSEDGTIKVWD