Input parameters:

  Query = YBL113C (Len=792)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YBL113C, Len=792):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLNQRKEKKGQHVGCCGSRTDLSADTVELIERMDRLAENQATASMSIVALPSSFQESNSSDRCRKYCSSDEDSDTCIHG 80  
WD40-rpts                                                                                      

Query       81 SANASTNATTNSSTNATTTASINVRTSATTTASINVRTSATTTESTNSNTNATTTESTNSSTNATTTASINVRTSATTTE 160 
WD40-rpts                                                                                      

Query      161 STNSSTNATTTASINVRTSATTTESTNSSTNATTTASINVRTSATTTESTNSNTNASTNATTNSSTNATTTASTNVRTSA 240 
WD40-rpts                                                                                      

Query      241 TTNATTNSSTNATTTASTNVRTSATTTASTNVRTSATTTASINVRTSATTTESINSSTNATTTESTNSNTSATTTESTDS 320 
WD40-rpts                                                                                      

Query      321 NTNATTTASINVRTSATTTESTNSNTSATTTESTDSNTSATTTASTNSSTNATTTASTNSSTNATTTESTNASAKEDANK 400 
WD40-rpts                                                                                      

Query      401 DGNAEDNRFHPVTDINKESYKRKGSQMVFLERKKLKAQFPNTSENMNVLQFLGFRSDEIKHLFLYGIDIYFCPEGVFTQY 480 
WD40-rpts                                                                                      

Query      481 GLCKGCQKMFGLCVCWAGQKVSYRRIAWEALAVERMLRNDEEYKEYLEDIEPYHGDPVGYLKYFSVKRREIYSQIQRNYA 560 
WD40-rpts                                                                                      

Query      561 WYLAITRRRETISVLDSTRGKQGSQVFRMSGRQIKELYYKVWSNLRESKTEVLQYFLNWDEKKCREEWEAKDDTVFVEAL 640 
WD40-rpts             (______________________________________________WD 1______________________

Query      641 EKVGVFQRLRSMTSAGLQGPQYVKLQFSRHHRQLRSRYELSLGMHLRDQLALGVTPSKVPHWTAFLSMLIGLFYNKTFRQ 720 
WD40-rpts      ________________________)                                                       

Query      721 KLEYLLEQISEMWLLPHWLDLANVEVLAADNTRVPLYMLMVAVHKELDSDDVPDGRFDIILLCRDSSREVGE 792 
WD40-rpts                                                                              

1 WD40-repeats found in QUERY=YBL113C (Len=792):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   568-665      2.82  231.02  0.04690       22.5%     21.40

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  568-665    RRETISVLDSTRGKQGSQVFRMSGRQIKELYYKVWSNLRESKTEVLQYFLNWDEKKCREEWEAKDDTVFVEALEKVGVFQRLRSMTSAGLQGPQYVKL

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDG---------------------------------------KRLV-------------------SGSEDGTIKVWD