Input parameters:

  Query = YBR097W (Len=1454)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YBR097W, Len=1454):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGAQLSLVVQASPSIAIFSYIDVLEEVHYVSQLNSSRFLKTCKALDPNGEIVIKVFIKPKDQYSLRPFLQRIRAQSFKLG 80  
WD40-rpts                                                                                      

Query       81 QLPHVLNYSKLIETNRAGYMIRQHLKNNLYDRLSLRPYLQDIELKFIAFQLLNTLKDIHNLNIVHGDIKTENILVTSWNW 160 
WD40-rpts                                                                                      

Query      161 CILTDFAAFIKPVYLPEDNPGEFLFYFDTSKRRTCYLAPERFNSKLYQDGKSNNGRLTKEMDIFSLGCVIAEIFAEGRPI 240 
WD40-rpts                                                                                      

Query      241 FNLSQLFKYKSNSYDVNREFLMEEMNSTDLRNLVLDMIQLDPSKRLSCDELLNKYRGIFFPDYFYTFIYDYFRNLVTMTT 320 
WD40-rpts                                                                                      

Query      321 STPISDNTCTNSTLEDNVKLLDETTEKIYRDFSQICHCLDFPLIKDGGEIGSDPPILESYKIEIEISRFLNTNLYFPQNY 400 
WD40-rpts                                                                                      

Query      401 HLVLQQFTKVSEKIKSVKEECALLFISYLSHSIRSIVSTATKLKNLELLAVFAQFVSDENKIDRVVPYFVCCFEDSDQDV 480 
WD40-rpts                                                                                      

Query      481 QALSLLTLIQVLTSVRKLNQLNENIFVDYLLPRLKRLLISNRQNTNYLRIVFANCLSDLAIIINRFQEFTFAQHCNDNSM 560 
WD40-rpts                                                                                      

Query      561 DNNTEIMESSTKYSAKLIQSVEDLTVSFLTDNDTYVKMALLQNILPLCKFFGRERTNDIILSHLITYLNDKDPALRVSLI 640 
WD40-rpts                                                                                      

Query      641 QTISGISILLGTVTLEQYILPLLIQTITDSEELVVISVLQSLKSLFKTGLIRKKYYIDISKTTSPLLLHPNNWIRQFTLM 720 
WD40-rpts                                                                                      

Query      721 IIIEIINKLSKAEVYCILYPIIRPFFEFDVEFNFKSMISCCKQPVSRSVYNLLCSWSVRASKSLFWKKIITNHVDSFGNN 800 
WD40-rpts                                                                                      

Query      801 RIEFITKNYSSKNYGFNKRDTKSSSSLKGIKTSSTVYSHDNKEIPLTAEDINWIDKFHIIGLTEKDIWKIVALRGYVIRT 880 
WD40-rpts                                                                                      

Query      881 ARVMAANPDFPYNNSNYRPLVQNSPPNLNLTNIMPRNIFFDVEFAEESTSEGQDSNLENQQIYKYDESEKDSNKLNINGS 960 
WD40-rpts                                                                                      

Query      961 KQLSTVMDINGSLIFKNKSIATTTSNLKNVFVQLEPTSYHMHSPNHGLKDNANVKPERKVVVSNSYEGDVESIEKFLSTF 1040
WD40-rpts                                                                                      

Query     1041 KILPPLRDYKEFGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS 1120
WD40-rpts                                        (_______________WD 1______________)(__________

Query     1121 SSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS 1200
WD40-rpts      ___________WD 2____________________)                                            

Query     1201 LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHV 1280
WD40-rpts             (_______________________WD 3_______________________)                     

Query     1281 EVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKIL 1360
WD40-rpts                                                                                      

Query     1361 LTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPL 1440
WD40-rpts                                                                                      

Query     1441 LVACDNSGLIGIFQ 1454
WD40-rpts                    

3 WD40-repeats found in QUERY=YBR097W (Len=1454):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14  1075-1109     3.55  261.41  0.01853       27.5%     32.13
  WD 2:  Seg 17  1110-1156     3.30  251.18  0.02537       25.0%     44.85
  WD 3:  Seg 25  1208-1259     4.08  283.02  0.00952       30.0%     40.95

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1075-1109   -----------------LM--------ENEPNSITSSAVSPGETPYLITGSDQGVIKIWN
   WD 2 1110-1156   LKEI----IVGEVYSSSLT--------YDCSSTVTQITMIPN-FDAFAVSSKDGQIIVLK
   WD 3 1208-1259   LSRVIIFDI-------RTLERLQIIENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIWD

   WD40 Template    TGEC----L-------RTL--------SGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD