Input parameters:

  Query = YBR103W (Len=535)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YBR103W, Len=535):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSITSEELNYLIWRYCQEMGHEVSALALQDETRVLEFDEKYKEHIPLGTLVNLVQRGILYTESELMVDSKGDISALNEHH 80  
WD40-rpts                                                                                      

Query       81 LSEDFNLVQALQIDKEKFPEISSEGRFTLETNSESNKAGEDGASTVERETQEDDTNSIDSSDDLDGFVKILKEIVKLDNI 160 
WD40-rpts                              (_________________WD 1________________)          (______

Query      161 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE 240 
WD40-rpts      ________WD 2_____________)                       (_________________WD 3_________

Query      241 NGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSL 320 
WD40-rpts      _______)  (_________________WD 4________________)           (___________________

Query      321 GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH 400 
WD40-rpts      _WD 5___________________)   (_________________WD 6________________)   (_________

Query      401 SQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRS 480 
WD40-rpts      _______WD 7________________)   (_________________WD 8________________)     (____

Query      481 LYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 535 
WD40-rpts      _____________WD 9_________________)                    

9 WD40-repeats found in QUERY=YBR103W (Len=535):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   105-143      5.20  329.55  0.00225        7.5%     -13.80
  WD 2:  Seg  4   154-186      5.38  336.72  0.00180       12.5%     44.46
  WD 3:  Seg  8   210-248      9.09  490.15  1.5e-05       27.5%     46.24
  WD 4:  Seg 11   251-289      9.63  512.29  7.7e-06       25.0%     53.97
  WD 5:  Seg 16   301-345      3.89  275.34  0.01206       20.0%     43.35
  WD 6:  Seg 20   349-387      9.71  515.67  7.0e-06       30.0%     56.31
  WD 7:  Seg 24   391-428      8.38  460.66  3.8e-05       30.0%     51.39
  WD 8:  Seg 28   432-470      8.70  474.20  2.5e-05       20.0%     56.89
  WD 9:  Seg 32   476-515      5.15  327.29  0.00242       17.5%     39.16

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  105-143    GRFTLETNSESNKAGED-GAST-VER-----------ETQEDDTNSIDSS-DD
   WD 2  154-186    -------IVKLDNIVSS-TWNPLDES-----------ILAYGEKNSVARL-AR
   WD 3  210-248    FALSASSGKTTNQVTCL-AWSH-DGN-----------SIVTGVENGELRL-WN
   WD 4  251-289    GALLNVLNFHRAPIVSV-KWNK-DGT-----------HIISMDVENVTIL-WN
   WD 5  301-345    -----LKETGGSSINAE-NHSG-DGSLGVDVEWVDDDKFVIPGPKGAIFV-YQ
   WD 6  349-387    KTPTGKLIGHHGPISVL-EFND-TNK-----------LLLSASDDGTLRI-WH
   WD 7  391-428    GNSQNCFYGHSQSIVSA-SWVG-DDK------------VISCSMDGSVRL-WS
   WD 8  432-470    NTLLALSIVDGVPIFAG-RISQ-DGQ-----------KYAVAFMDGQVNV-YD
   WD 9  476-515    -SKSRSLYGNRDGILNPLPIPL-YAS-----------YQSSQDNDYIFDLSWN

   WD40 Template    GECLRTLSGHTSGVTSV-SFSP-DGK-----------RLVSGSEDGTIKV-WD