Input parameters:

  Query = YBR118W (Len=458)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YBR118W, Len=458):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF 80  
WD40-rpts      (_____________________________________WD 1____________________________________) 

Query       81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKW 160 
WD40-rpts       (______________________________WD 2______________________________)             

Query      161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPT 240 
WD40-rpts                                                                                      

Query      241 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRR 320 
WD40-rpts                                                                                      

Query      321 GNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALV 400 
WD40-rpts                                                                                      

Query      401 KFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTEKAAKVTKAAQKAAKK 458 
WD40-rpts                                                                

2 WD40-repeats found in QUERY=YBR118W (Len=458):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-79       2.97  237.39  0.03865       22.5%     20.32
  WD 2:  Seg  4    82-147      2.84  232.16  0.04531       22.5%     26.31

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-79     MGKEKSHINVVVIGH-------------VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID----------IALWK
   WD 2   82-147    TPKYQVTVI-DAPGHRDFIKNMITGTSQADCAILIIAG--------GV----------------GEFEAGISKD-----------GQTREHALLAFTLGVRQ

   WD40 Template    TGECLRTLS----GH-------------TSGVTSVSFS--------PD----------------GKRLVSGSED-----------GT----------IKVWD