WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: YBR175W    [Saccharomyces cerevisiae]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = YBR175W (Len=315)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YBR175W, Len=315):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFQFVTPVGTQNGLKATCAKISPDGQFLAITQGLNILIYDINRRTVSQTLVTSHARPFSELCWSPDGQCIATASDDFSVE 80  
WD40-rpts      (_________________WD 1_________________)(___________________WD 2________________

Query       81 IIHLSYGLLHTFIGHTAPVISLTFNRKGNLLFTSSMDESIKIWDTLNGSLMKTISAHSEAVVSVDVPMNDSSILSSGSYD 160 
WD40-rpts      __)(__________________WD 3_________________)   (_________________WD 4___________

Query      161 GLIRIFDAETGHCLKTLTYDKDWKRENGVVPISQVKFSENARYLLVKSLDGVVKIWDCIGGCVVRTFQVQPLEKGVLHHS 240 
WD40-rpts      ______)   (_____________________WD 5____________________)           (___________

Query      241 CGMDFLNPEDGSTPLVISGYENGDIYCWNSDTKSLLQLLDGSLYHHSSPVMSIHCFGNIMCSLALNGDCCLWRWV 315 
WD40-rpts      _______WD 6_________________)   (__________________WD 7_________________)  



7 WD40-repeats found in QUERY=YBR175W (Len=315):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       6.09  366.43  0.00072       27.5%     53.68
  WD 2:  Seg  5    41-83       8.38  460.68  3.8e-05       17.5%     53.31
  WD 3:  Seg  9    84-124     10.04  529.54  4.5e-06       40.0%     53.32
  WD 4:  Seg 13   128-167      9.34  500.60  1.1e-05       40.0%     55.55
  WD 5:  Seg 17   171-217      8.74  475.74  2.4e-05       37.5%     57.03
  WD 6:  Seg 22   229-269      7.22  413.09  0.00017       27.5%     42.50
  WD 7:  Seg 25   273-313      6.48  382.17  0.00044       22.5%     45.82
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-40     MFQ----FVTPVGTQN--------GLKATC--AKIS-PDGQ--FLAITQ-GLNILIYD
   WD 2   41-83     INRRTVSQTLVTSHAR--------P--FSE--LCWS-PDGQ--CIATASDDFSVEIIH
   WD 3   84-124    LSY--GLLHTFIGHTA--------P--VIS--LTFN-RKGN--LLFTSSMDESIKIWD
   WD 4  128-167    -GS---LMKTISAHSE--------A--VVS--VDVPMNDSS--ILSSGSYDGLIRIFD
   WD 5  171-217    -GH---CLKTLTYDKDWKRENGVVP--ISQ--VKFS-ENAR--YLLVKSLDGVVKIWD
   WD 6  229-269    -VQ---PLEKGVLHHS--------C--GMD--FLNP-EDGSTPLVISGYENGDIYCWN
   WD 7  273-313    -KS---LLQLLDGSLY--------H--HSSPVMSIH-CFGN--IMCSLALNGDCCLWR

   WD40 Template    TGE---CLRTLSGHTS--------G--VTS--VSFS-PDGK--RLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019