Input parameters:
Query = YBR175W (Len=315)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (YBR175W, Len=315):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MFQFVTPVGTQNGLKATCAKISPDGQFLAITQGLNILIYDINRRTVSQTLVTSHARPFSELCWSPDGQCIATASDDFSVE 80
WD40-rpts (_________________WD 1_________________)(___________________WD 2________________
Query 81 IIHLSYGLLHTFIGHTAPVISLTFNRKGNLLFTSSMDESIKIWDTLNGSLMKTISAHSEAVVSVDVPMNDSSILSSGSYD 160
WD40-rpts __)(__________________WD 3_________________) (_________________WD 4___________
Query 161 GLIRIFDAETGHCLKTLTYDKDWKRENGVVPISQVKFSENARYLLVKSLDGVVKIWDCIGGCVVRTFQVQPLEKGVLHHS 240
WD40-rpts ______) (_____________________WD 5____________________) (___________
Query 241 CGMDFLNPEDGSTPLVISGYENGDIYCWNSDTKSLLQLLDGSLYHHSSPVMSIHCFGNIMCSLALNGDCCLWRWV 315
WD40-rpts _______WD 6_________________) (__________________WD 7_________________)
7 WD40-repeats found in QUERY=YBR175W (Len=315):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-40 6.09 366.43 0.00072 27.5% 53.68
WD 2: Seg 5 41-83 8.38 460.68 3.8e-05 17.5% 53.31
WD 3: Seg 9 84-124 10.04 529.54 4.5e-06 40.0% 53.32
WD 4: Seg 13 128-167 9.34 500.60 1.1e-05 40.0% 55.55
WD 5: Seg 17 171-217 8.74 475.74 2.4e-05 37.5% 57.03
WD 6: Seg 22 229-269 7.22 413.09 0.00017 27.5% 42.50
WD 7: Seg 25 273-313 6.48 382.17 0.00044 22.5% 45.82
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-40 MFQ----FVTPVGTQN--------GLKATC--AKIS-PDGQ--FLAITQ-GLNILIYD
WD 2 41-83 INRRTVSQTLVTSHAR--------P--FSE--LCWS-PDGQ--CIATASDDFSVEIIH
WD 3 84-124 LSY--GLLHTFIGHTA--------P--VIS--LTFN-RKGN--LLFTSSMDESIKIWD
WD 4 128-167 -GS---LMKTISAHSE--------A--VVS--VDVPMNDSS--ILSSGSYDGLIRIFD
WD 5 171-217 -GH---CLKTLTYDKDWKRENGVVP--ISQ--VKFS-ENAR--YLLVKSLDGVVKIWD
WD 6 229-269 -VQ---PLEKGVLHHS--------C--GMD--FLNP-EDGSTPLVISGYENGDIYCWN
WD 7 273-313 -KS---LLQLLDGSLY--------H--HSSPVMSIH-CFGN--IMCSLALNGDCCLWR
WD40 Template TGE---CLRTLSGHTS--------G--VTS--VSFS-PDGK--RLVSGSEDGTIKVWD