Input parameters:

  Query = YBR195C (Len=422)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YBR195C, Len=422):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNQCAKDITHEASSIPIDLQERYSHWKKNTKLLYDYLNTNSTKWPSLTCQFFPDLDTTSDEHRILLSSFTSSQKPEDETI 80  
WD40-rpts                                                                                      

Query       81 YISKISTLGHIKWSSLNNFDMDEMEFKPENSTRFPSKHLVNDISIFFPNGECNRARYLPQNPDIIAGASSDGAIYIFDRT 160 
WD40-rpts                                                    (_____________WD 1_____________)  

Query      161 KHGSTRIRQSKISHPFETKLFGSHGVIQDVEAMDTSSADINEATSLAWNLQQEALLLSSHSNGQVQVWDIKQYSHENPII 240 
WD40-rpts                           (_____________________WD 2_____________________)(__________

Query      241 DLPLVSINSDGTAVNDVTWMPTHDSLFAACTEGNAVSLLDLRTKKEKLQSNREKHDGGVNSCRFNYKNSLILASADSNGR 320 
WD40-rpts      _____________WD 3______________________)     (_________________WD 4_____________

Query      321 LNLWDIRNMNKSPIATMEHGTSVSTLEWSPNFDTVLATAGQEDGLVKLWDTSCEETIFTHGGHMLGVNDISWDAHDPWLM 400 
WD40-rpts      ____)    (__________________WD 5_________________)   (_________________WD 6_____

Query      401 CSVANDNSVHIWKPAGNLVGHS 422 
WD40-rpts      ____________)         

6 WD40-repeats found in QUERY=YBR195C (Len=422):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   127-158      3.53  260.44  0.01909       15.0%     46.99
  WD 2:  Seg  9   182-229      6.21  371.17  0.00062       27.5%     52.61
  WD 3:  Seg 13   230-280      5.47  340.51  0.00160       17.5%     52.94
  WD 4:  Seg 16   286-325      6.37  377.61  0.00051       25.0%     49.30
  WD 5:  Seg 20   330-370      7.27  414.84  0.00016       27.5%     46.38
  WD 6:  Seg 24   374-413      7.00  403.82  0.00022       27.5%     51.69

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  127-158    --------------------------FPNGECNRARYLPQNPD-II--AGASSDGAIYIFD
   WD 2  182-229    GSHGVIQDVE----------AMDTSSADINEATSLAWNLQQEA-LL--LSSHSNGQVQVWD
   WD 3  230-280    IK-------QYSHENPIIDLPLVSINSDGTAVNDVTWMP-THD-SL-FAACTEGNAVSLLD
   WD 4  286-325    -E-------K----------LQSNREKHDGGVNSCRFNY-KNSLIL--ASADSNGRLNLWD
   WD 5  330-370    -N-------K----------SPIATMEHGTSVSTLEWSP-NFD-TVLATAGQEDGLVKLWD
   WD 6  374-413    -E-------E----------TIFTHGGHMLGVNDISWDAHDPW-LM--CSVANDNSVHIWK

   WD40 Template    TG-------E----------CLRTLSGHTSGVTSVSFSP-DGK-RL--VSGSEDGTIKVWD