Input parameters:

  Query = YBR198C (Len=798)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YBR198C, Len=798):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQKQSTNQNQNGTHQPQPVKNQRTNNAAGANSGQQPQQQSQGQSQQQGRSNGPFSASDLNRIVLEYLNKKGYHRTEAML 80  
WD40-rpts                                                                                      

Query       81 RAESGRTLTPQNKQSPANTKTGKFPEQSSIPPNPGKTAKPISNPTNLSSKRDAEGGIVSSGRLEGLNAPENYIRAYSMLK 160 
WD40-rpts                                                                                      

Query      161 NWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSH 240 
WD40-rpts                                                                                      

Query      241 KYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIVESVTAREKLADGIKVLSDSENGNGKQNLEMNSVPVKLG 320 
WD40-rpts                                                                                      

Query      321 PFPKDEEFVKEIETELKIKDDQEKQLNQQTAGDNYSGANNRTLLQEYKAMNNEKFKDNTGDDDKDKIKDKIAKDEEKKES 400 
WD40-rpts                                                                                   (__

Query      401 ELKVDGEKKDSNLSSPARDILPLPPKTALDLKLEIQKVKESRDAIKLDNLQLALPSVCMYTFQNTNKDMSCLDFSDDCRI 480 
WD40-rpts      _______________WD 1_________________)                  (_________________WD 2___

Query      481 AAAGFQDSYIKIWSLDGSSLNNPNIALNNNDKDEDPTCKTLVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTAL 560 
WD40-rpts      _____________)                    (_________________WD 3________________)   (___

Query      561 VSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVST 640 
WD40-rpts      ______________WD 4________________)   (_________________WD 5________________)   

Query      641 GDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSKEGNVLISGGADHTVRV 720 
WD40-rpts      (_________________WD 6________________)   (_________________WD 7________________

Query      721 WDLKKATTEPSAEPDEPFIGYLGDVTASINQDIKEYGRRRTVIPTSDLVASFYTKKTPVFKVKFSRSNLALAGGAFRP 798 
WD40-rpts      _)   (__________________WD 8__________________)                               

8 WD40-repeats found in QUERY=YBR198C (Len=798):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   398-437      4.49  300.07  0.00561       15.0%     16.15
  WD 2:  Seg  6   456-494      7.85  439.00  7.5e-05       25.0%     52.88
  WD 3:  Seg 10   515-553      9.17  493.46  1.4e-05       50.0%     50.00
  WD 4:  Seg 14   557-595      8.99  486.09  1.7e-05       35.0%     51.12
  WD 5:  Seg 18   599-637      9.68  514.68  7.2e-06       40.0%     47.68
  WD 6:  Seg 22   641-679     10.70  556.68  2.0e-06       50.0%     51.83
  WD 7:  Seg 26   683-722      9.19  494.41  1.3e-05       40.0%     56.13
  WD 8:  Seg 30   726-767      3.25  248.89  0.02721       12.5%     30.75

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  398-437    KESELKVDGE-K---KDSNLSSPARDILPLPPKTALDLKLEIQK
   WD 2  456-494    SVCMYTFQNT-N---KDMSCLDFSDDCRIAAAGFQ-DSYIKIWS
   WD 3  515-553    DPTCKTLVGH-S---GTVYSTSFSPDNKYLLSGSE-DKTVRLWS
   WD 4  557-595    HTALVSYKGH-N---HPVWDVSFSPLGHYFATASH-DQTARLWS
   WD 5  599-637    IYPLRIFAGH-L---NDVDCVSFHPNGCYVFTGSS-DKTCRMWD
   WD 6  641-679    GDSVRLFLGH-T---APVISIAVCPDGRWLSTGSE-DGIINVWD
   WD 7  683-722    GKRLKQMRGHGK---NAIYSLSYSKEGNVLISGGA-DHTVRVWD
   WD 8  726-767    ATTEPSAEPD-EPFIGYLGDVTASINQDIKEYGRR-RTVIPTSD

   WD40 Template    GECLRTLSGH-T---SGVTSVSFSPDGKRLVSGSE-DGTIKVWD