Input parameters:

  Query = YBR234C (Len=384)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YBR234C, Len=384):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSFSNSKDKSVVAVYKLVKAPIYSHCFSQDKSILAVTCETDCLVYRVSNNTPPVLFATLKDHDKTITAVDISIHGRIVTC 80  
WD40-rpts             (_________________WD 1_________________)     (________________WD 2_______

Query       81 SQDRNAYVWEPLSDGTYKPTLVLLRINRAATSVTWAPNGYKFAVGSSARIIAVCYYEHENNWWVSKHIKKPIKSTINCLS 160 
WD40-rpts      _________)      (_________________WD 3________________)   (___________________WD

Query      161 WHANGVLLAAGGTDGFMRVFSGFIKGLDSKESVAGSPWGQKFPFGCLIREWYQGSYIHDVEWRSQMERIAYVAHDGTLNV 240 
WD40-rpts       4__________________)                      (_________________WD 5_______________

Query      241 VDYQSPVQSVNAPEGLPYRSLVWINDHEIVCGGYSCHPVLFSEASEGWKFAKNLDKSDNNKSSALTASGNTDELSGNNDE 320 
WD40-rpts      _)(__________________WD 6_________________)(___________________WD 7_____________

Query      321 SSTFGISALRKFKELDLKGKVSTDVQESAHENAIVELRPFAESNGQITQVSSCGLDGKIVIYTI 384 
WD40-rpts      _____)(__________________________WD 8_________________________) 

8 WD40-repeats found in QUERY=YBR234C (Len=384):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-47       6.60  387.44  0.00037       15.0%     56.93
  WD 2:  Seg  5    53-90       8.08  448.55  5.6e-05       32.5%     50.77
  WD 3:  Seg  9    97-135      7.91  441.26  7.0e-05       25.0%     53.85
  WD 4:  Seg 13   139-181      8.25  455.34  4.5e-05       20.0%     50.87
  WD 5:  Seg 17   204-242      6.79  394.94  0.00030       25.0%     56.92
  WD 6:  Seg 21   243-283      5.30  333.71  0.00198        7.5%     49.94
  WD 7:  Seg 25   284-326      5.36  335.90  0.00185       15.0%     42.90
  WD 8:  Seg 29   327-383      4.14  285.56  0.00880       17.5%     41.90

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-47     DK-------------S---VVAVYKL-VKAPIYSHC-FSQDKSIL---AVTCETDCLVYRV
   WD 2   53-90     -P-------------V---LFATLKD-HDKTITAVD-ISIHG-RI---VTCSQDRNAYVWE
   WD 3   97-135    -Y-------------K---PTLVLLR-INRAATSVT-WAPNGYKF---AVGSSARIIAVCY
   WD 4  139-181    EN-------------NWWVSKHIKKP-IKSTINCLS-WHANGVLL---AAGGTDGFMRVFS
   WD 5  204-242    -F-------------G---CLIREWY-QGSYIHDVE-WRSQMERI---AYVAHDGTLNVVD
   WD 6  243-283    YQ-------------S---PVQSVNAPEGLPYRSLV-WINDHEIV---CGGYSCHPVLFSE
   WD 7  284-326    AS-------------EGWKFAKNLDK-SDNNKSSAL-TASGNTDE---LSGNNDESSTFGI
   WD 8  327-383    SALRKFKELDLKGKVS---TDVQESA-HENAIVELRPFAESNGQITQVSSCGLDGKIVIYT

   WD40 Template    TG-------------E---CLRTLSG-HTSGVTSVS-FSPDGKRL---VSGSEDGTIKVWD