Input parameters:

  Query = YBR246W (Len=387)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YBR246W, Len=387):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSIQESDVLNAVKTKLPPCCLRIFRNKIILVGTYDLDKSTGYRSGSLDVFTMDLKLLCSNNTYGAILDLKLSPFDDTLI 80  
WD40-rpts                                                          (__________________WD 1_____

Query       81 CTAHSTGNIMLWRIRCTDKDDFQSNELDIHAIANLQLFEKDVLIASCHFSPLDCKKLLVTNTAGEAATIDIRTLSVQFTA 160 
WD40-rpts      ____________)                 (_________________WD 2_________________)          

Query      161 SAIAQAYSKLDKIDYEVQGATEKVIHVESGQFLKPHELECWTAEFGSLQPFQDVVFTGGDDSRIMAHDLRSKEFIWSNNR 240 
WD40-rpts                                 (__________________WD 3_________________)(___________

Query      241 IHDAGVVSIKCSQPNFRNNKPTSIITGSYDDNIRSLDLRMMGESIFPGANVPTVNKLACDLGGGVWRFVESPIDQEQSHH 320 
WD40-rpts      ___________WD 4_____________________)                                           

Query      321 NGSDRLLVCCMYNGAKVVTMNDNSDEYFQIQHYLKKGHDSMCYGGDWSNSLIATCSFYDNSLQTWIV 387 
WD40-rpts                           (____________________WD 5___________________) 

5 WD40-repeats found in QUERY=YBR246W (Len=387):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    53-93       6.85  397.56  0.00027       17.5%     56.83
  WD 2:  Seg  8   111-150      3.18  246.05  0.02968       25.0%     50.57
  WD 3:  Seg 16   188-228      6.54  384.88  0.00040       22.5%     45.29
  WD 4:  Seg 20   229-277      6.17  369.50  0.00065       25.0%     49.66
  WD 5:  Seg 28   342-386      3.64  265.04  0.01657       17.5%     43.60

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   53-93     MDL------KLLCSNNTYGAILDLKL---SP-----FDDTLICTAH-STGNIMLWR
   WD 2  111-150    -AI------ANLQLFEKDVLIASCHF---SP-----LDCKKLLVTN-TAGEAATID
   WD 3  188-228    --E------SGQFLKPHELECWTAEFGSLQP------FQDVVFTGG-DDSRIMAHD
   WD 4  229-277    LRS---KEFIWSNNRIHDAGVVSIKC---SQPNFRNNKPTSIITGS-YDDNIRSLD
   WD 5  342-386    DNSDEYFQIQHYLKKGHDSMCYGGDW---SN------S--LIATCSFYDNSLQTWI

   WD40 Template    TGE------CLRTLSGHTSGVTSVSF---SP------DGKRLVSGS-EDGTIKVWD