Input parameters:

  Query = YBR281C (Len=878)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YBR281C, Len=878):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYDSRGVALHSELIHRWNHAFSILSIVAFPKKRLLFAGSQDSKILVFDLPTYNLIHTIRLGESQEETHTRSSVLCLTGSE 80  
WD40-rpts              (_________________WD 1_________________)           (_________________WD 

Query       81 DENFLFSGGADSLVRIWSIGEKTIRDDFLPVTEIATVYSVTDIGDIFSLAYLDSLETIVFGCQNASLLYVENLIQKIEKK 160 
WD40-rpts      2________________)                                                              

Query      161 SSDGVENINKLPHRRYDKFFDSLGPTGYSSNSLSQTSLTSLQENCGAAIIEVPSENIIKYAHYGFIYSINKLCPRFNQLL 240 
WD40-rpts                                                          (________________________WD 

Query      241 EKSSRTSGAEHIISSAGDGISKLWEFSKDKGQNTVKISLINDKIDNEDSVISQTIEFPFLYCGLTDGIIKIWDLNTQQII 320 
WD40-rpts      3_______________________)(_____________________WD 4_____________________)       

Query      321 STLKTKHESDVISISVYMDHVFAIDESGITHFYQNQVNHWNPQQGKILSSEIFSKSNAGSVSLLTGGSDGSLTLWDITSL 400 
WD40-rpts                                        (__________________WD 5__________________)    

Query      401 LSAVPLSSNSPINASSTLQTTNLWAAYQSASLNNEEMLNTLRELISFQTVSQSKDTTNTLSLRRCAIYLQQLFLKFGATN 480 
WD40-rpts                                                                                      

Query      481 SQLFPLPDGGNPVVFAYFQGNGKVSQVKGAKKKRILWYGHYDVISSGNTFNWNTDPFTLTCENGYLKGRGVSDNKGPLVS 560 
WD40-rpts                                                                                      

Query      561 AIHSVAYLFQQGELVNDVVFLVEGSEEIGSASLKQVCEKYHDIIGKDIDWILLSNSTWVDQEHPCLNYGLRGVINAQIKV 640 
WD40-rpts                                                                                      

Query      641 WSDKPDGHSGLNGGVYDEPMVNLVKIVSKLQNEQNEIMIPNFYSPLKDLTEEEYQRFQKITELANIDENTTVQDLITNWT 720 
WD40-rpts                                                                                      

Query      721 KPSLSMTTVKFSGPGNITVIPKSVTMGISIRLVPEQSVEQVKRDLKAYLEESFKQLKSQNHLEIKVLNEAEGWLGDPTNH 800 
WD40-rpts                                                                                      

Query      801 AYQILKDEITTAWDVEPLLVREGGSISCLRMLERIFDAPAVQIPCGQSTDNGHLANENLRIKNWSNLTEILSKVFNRL 878 
WD40-rpts                                                                                    

5 WD40-repeats found in QUERY=YBR281C (Len=878):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-48       4.31  292.87  0.00702       27.5%     46.55
  WD 2:  Seg  6    60-98       5.36  335.93  0.00185       27.5%     37.09
  WD 3:  Seg 13   213-265      3.69  267.15  0.01553       22.5%     29.91
  WD 4:  Seg 16   266-313      2.91  234.81  0.04182       25.0%     21.06
  WD 5:  Seg 24   355-396      3.59  263.10  0.01759       17.5%     35.31

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-48     LHSELIHRWNHAFSI--------LSI--------------VA----FPKKRLLFAGSQDSKILVFD
   WD 2   60-98     LGESQEETHTRSS-V--------LCL--------------TG----SEDENFLFSGGADSLVRIWS
   WD 3  213-265    PSENIIKYA-HYGFI--------YSINKLCPRFNQLLEKSSR----TSGAEHIISSAGDGISKLWE
   WD 4  266-313    FSKDKGQNTVKISLINDKIDNEDSVI--------------SQ----TIEFPFLYCGLTDGIIKIWD
   WD 5  355-396    --NQVNHWNPQQGKI--------LSS--------------EIFSKSNAGSVSLLTGGSDGSLTLWD

   WD40 Template    TGECLRTLSGHTSGV--------TSV--------------SF----SPDGKRLVSGSEDGTIKVWD