WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: YCL039W [Saccharomyces cerevisiae] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = YCL039W (Len=745) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (YCL039W, Len=745): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSHTNKIAYVLNNDTEETASPSSVGCFDKKQLTKLLIHTLKELGYDSAANQLLLESGGYQNESNHIQTFFKLIKTGQFHL 80
WD40-rpts
Query 81 INWQIVCSLPLAHSSPLRSEWLQRLLIPTPTPATTSLFDHMLLQLQYLQQLMSSVNSSTCSDAEIATLRNYVEIMILVNR 160
WD40-rpts
Query 161 QIFLEFFHPVTNSASHKGPHTALPVLYLRKILKNFIEIWDSLLVSNDQFLNEENIFNPETTLRELSTYLTNPKLTAQLNL 240
WD40-rpts
Query 241 ERDHLIDAISKYIDPNELVPKGRLLHLLKQAIKYQQSQDIFNIIDPDDDASFSSPPHRINLLQDNFSHDLTVTFQEWKTI 320
WD40-rpts (______________WD 1______________) (______
Query 321 QDTTDEIWFLTFSPNGKYLASATSESSRGYFITVYDVEQDFKIYKTCVSLSQSVLYLMFSPDSRYLVACPFSEDVTIYDM 400
WD40-rpts _____________WD 2__________________) (_________________WD 3________________)(
Query 401 NATSLPDASATDSFLLYPSTRLSPMDSFKLDTTTYPDDTESSASSSSRPANANSNQSRVWCCDAFHTAERAGWMVVGSPD 480
WD40-rpts _________________WD 4________________) (____________________WD 5______________
Query 481 REAIVHSLTTKESLFSLKGRTCIALGHDENISGRKSIDPAKVLYKPTSSNGNWQYVEDDETFPRVHDVKISYDDKYVLLM 560
WD40-rpts ______) (_______________WD 6______________) (_________________WD 7_______
Query 561 THQGVIDVYDFSGFPSKEELSKQTVDPKNFLIPRIARLDVGKNMTCISLPLNTTHQGFHRQQISESQHLVLVSLQDNELQ 640
WD40-rpts _________) (_________________WD 8______________
Query 641 MWDYKENILIQKYFGQKQQHFIIRSCFAYGNKLVMSGSEDGKIYIWDRIRGNLVSVLSGHSTVMSNSTKPMGKNCNVVAS 720
WD40-rpts __) (__________________WD 9_________________) (_______________________WD10__
Query 721 NPADKEMFASGGDDGKIKIWKISRN 745
WD40-rpts ____________________)
 10 WD40-repeats found in QUERY=YCL039W (Len=745): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 278-311 4.36 294.66 0.00664 2.5% 8.00 WD 2: Seg 6 314-356 8.06 447.51 5.8e-05 30.0% 55.20 WD 3: Seg 10 361-399 8.57 468.49 3.0e-05 22.5% 47.96 WD 4: Seg 14 400-438 4.84 314.67 0.00357 12.5% 0.10 WD 5: Seg 16 442-487 6.08 365.68 0.00073 17.5% 28.33 WD 6: Seg 19 491-525 5.79 353.75 0.00106 20.0% 50.51 WD 7: Seg 23 532-570 7.07 406.67 0.00021 22.5% 52.18 WD 8: Seg 29 605-643 7.14 409.71 0.00019 15.0% 48.68 WD 9: Seg 33 647-687 7.95 442.93 6.7e-05 30.0% 56.42 WD10: Seg 37 691-741 7.19 411.73 0.00018 32.5% 40.60Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 278-311 -----QDIFNIID--PDDDASFS------------SP-------PHRINLLQDNF----SHDLT WD 2 314-356 FQEWKTIQDTTDE--IWFLTFSP------------NG-------KYLASATSESSRGYFITVYD WD 3 361-399 FKIYKTCVSLSQS--VLYLMFSP------------DS-------RYLVACPFSED----VTIYD WD 4 400-438 MNATSLPDASATD--SFLLYPST------------RL-------SPMDSFKLDTT----TYPDD WD 5 442-487 SASSSSRPANANS--NQSRVWCC------------DAFHTAERAGWMVVGSPDRE----AIVHS WD 6 491-525 KESLFSLKGRT------CIALGH------------DE-------NISGRKSIDPA----KVLYK WD 7 532-570 NWQYVEDDETFPR--VHDVKISY------------DD-------KYVLLMTHQGV----IDVYD WD 8 605-643 TCISLPLNTTHQG--FHRQQISE------------SQ-------HLVLVSLQDNE----LQMWD WD 9 647-687 NILIQKYFGQKQQHFIIRSCFAY------------GN-------KLVMSGSEDGK----IYIWD WD10 691-741 GNLVSVLSGHSTV--MSNSTKPMGKNCNVVASNPADK-------EMFASGGDDGK----IKIWK WD40 Template GECLRTLSGHTSG--VTSVSFSP------------DG-------KRLVSGSEDGT----IKVWD |
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