Input parameters:
Query = YDL006W (Len=281)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (YDL006W, Len=281):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSNHSEILERPETPYDITYRVGVAENKNSKFRRTMEDVHTYVKNFASRLDWGYFAVFDGHAGIQASKWCGKHLHTIIEQN 80
WD40-rpts
Query 81 ILADETRDVRDVLNDSFLAIDEEINTKLVGNSGCTAAVCVLRWELPDSVSDDSMDLAQHQRKLYTANVGDSRIVLFRNGN 160
WD40-rpts (__
Query 161 SIRLTYDHKASDTLEMQRVEQAGGLIMKSRVNGMLAVTRSLGDKFFDSLVVGSPFTTSVEITSEDKFLILACDGLWDVID 240
WD40-rpts _______________________WD 1________________________)
Query 241 DQDACELIKDITEPNEAAKVLVRYALENGTTDNVTVMVVFL 281
WD40-rpts
1 WD40-repeats found in QUERY=YDL006W (Len=281):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 7 158-212 2.82 231.16 0.04671 17.5% 22.55
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 158-212 NGNSIRLTYDHKASDTLEMQRVEQAGGLIMKSRVNGMLAVTRSLGDKFFDSLVVG
WD40 Template TGECLRTLSGHTSGV-----------TSVSFSPDGKRLV----SGSEDGTIKVWD