Input parameters:

  Query = YDL031W (Len=995)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YDL031W, Len=995):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGVQKRKRDLEDQDDNGSEEDDIAFDIANEIALNDSESDANDSDSEVEADYGPNDVQDVIEYSSDEEEGVNNKKKAENK 80  
WD40-rpts                                                                                      

Query       81 DIKKKKNSKKEIAAFPMLEMSDDENNASGKTQTGDDEDDVNEYFSTNNLEKTKHKKGSFPSFGLSKIVLNNIKRKGFRQP 160 
WD40-rpts                                                                                      

Query      161 TPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVL 240 
WD40-rpts                  (___________________________________________WD 1____________________

Query      241 LTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTTRQTLLFSA 320 
WD40-rpts      _______________________)                                                        

Query      321 TLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSDS 400 
WD40-rpts                                                                                      

Query      401 DDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRA 480 
WD40-rpts                                                                                      

Query      481 GLTSILVVTDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLGKKILLTPM 560 
WD40-rpts                                                                                      

Query      561 YDSLVDVMKKRWIDEGKPEYQFQPPKLSYTKRLVLGSCPRLDVEGLGDLYKNLMSSNFDLQLAKKTAMKAEKLYYRTRTS 640 
WD40-rpts                                                                                      

Query      641 ASPESLKRSKEIISSGWDAQNAFFGKNEEKEKLDFLAKLQNRRNKETVFEFTRNPDDEMAVFMKRRRKQLAPIQRKATER 720 
WD40-rpts                                                                                      

Query      721 RELLEKERMAGLHILSKMKFWKGDDVETGYTVSEDALKEFEDAHQLLEAQENENKKKKKPKSFKDPTFFLSHYAPAGDIQ 800 
WD40-rpts                                                                                      

Query      801 DKQLQITNGFANDAAQAAYDLNSDDKVQVHKQTATVKWDKKRKKYVNTQGIDNKKYIIGESGQKIAASFRSGRFDDWSKA 880 
WD40-rpts                                                                                      

Query      881 RNLKPLKVGSRETSIPSNLLEDPSQGPAANGRTVRGKFKHKQMKAPKMPDKHRDNYYSQKKKVEKALQSGISVKGYNNAP 960 
WD40-rpts                                                                                      

Query      961 GLRSELKSTEQIRKDRIIAEKKRAKNARPSKKRKF 995 
WD40-rpts                                         

1 WD40-repeats found in QUERY=YDL031W (Len=995):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   173-264      3.19  246.56  0.02922       17.5%     39.36

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  173-264    QSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIAT

   WD40 Template    TGECLRTLSGHTS---------------------GVTSVSFSPD--------------------GKRLVSGSED-----------GTIKVWD