Input parameters:

  Query = YDL145C (Len=1201)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YDL145C, Len=1201):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKMLTKFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGTLLHRFEDHEGPVRGLDFHPTQPIFVSAGDDYTIKVW 80  
WD40-rpts      (_________________WD 1________________)   (_________________WD 2________________

Query       81 SLDTNKCLYTLTGHLDYVRTVFFHRELPWIISASDDQTIRIWNWQNRKEIACLTGHNHFVMCAQFHPTDDLIVSASLDET 160 
WD40-rpts      )   (_________________WD 3________________)   (_________________WD 4____________

Query      161 IRIWDISGLRKRHSAPGTSSFEEQMSAQQNLLDGSLGDCVVKFILEGHTRGVNWASFHPTLPLIVSGSDDRQVKLWRMSA 240 
WD40-rpts      ____)                                  (________________WD 5________________)(__

Query      241 TKAWEVDTCRGHTNNVDSVIFHPHQNLIISVGEDKTLRVWDLDKRTPVKQFKRENDRFWLIAAHPHINLFGAAHDSGIMV 320 
WD40-rpts      _________________WD 6___________________)   (________________WD 7_______________

Query      321 FKLDRERPCSFIHQNQLFFVNAEKQIQSFNFQKRVASLPYASLKGIGQPWDAFRSISYNPSQHSVLVNEANGKFALVILP 400 
WD40-rpts      _)          (_________________WD 8________________)                             

Query      401 KQPVGAVEPTSVTQDTGNFATFVGRNRFVVYNKNTESVEVRSLENKVTRNIKVEETVRTIVAAGPGSVLVIHPREVILYD 480 
WD40-rpts                                                                                      

Query      481 VQQGKKVSQLAVKNVKYVSWSLDGQYVALMSKHTITLATKKLELINSMHETIRIKSAAWDETGVLIYSTLNHIRYSLLNG 560 
WD40-rpts        (________________WD 9_______________)(_________________WD10_________________) 

Query      561 DRGIIKTLEKTLYITKVQGKLVYCLNREGEIEILTIDPTEYRFKKALVNKNFPEVLRLIKDSNLVGQNIISYLQKSGYPE 640 
WD40-rpts                                                                                      

Query      641 IALQFVQDPHIRFDLALEYGNLDVALDEAKKLNDSSTWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKL 720 
WD40-rpts                                                                                      

Query      721 SKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAASAFLEQAEVDEQDVTLPDQMDASNF 800 
WD40-rpts                                                                                      

Query      801 VQRPVISKPLEKWPLKEAELSYFEKAVLGQIDDLTIDDETPAVNTTQEQEEPLGEENFNDEDIGEDEGAWDLGDEDLDVG 880 
WD40-rpts                                                                                      

Query      881 EELPEEVEQGEITSPAQEVETAIWIKNSKLPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCE 960 
WD40-rpts                                                                                      

Query      961 LPAQLGYVRAYDDTVSEDQILPYVPGLDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILET 1040
WD40-rpts                                                                                      

Query     1041 AREYILGLSIELERRSLKEGNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAE 1120
WD40-rpts                                                                                      

Query     1121 QARKIKNKADSMASDAIPIDFDPYAKFDICAATYKPIYEDTPSVSDPLTGSKYVITEKDKIDRIAMISKIGAPASGLRIR 1200
WD40-rpts                                                                                      

Query     1201 V 1201
WD40-rpts       

10 WD40-repeats found in QUERY=YDL145C (Len=1201):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       5.20  329.45  0.00226       17.5%     55.59
  WD 2:  Seg  5    43-81       7.67  431.52  9.5e-05       35.0%     58.11
  WD 3:  Seg  9    85-123      8.62  470.87  2.8e-05       37.5%     56.32
  WD 4:  Seg 13   127-165      8.54  467.55  3.1e-05       35.0%     56.72
  WD 5:  Seg 20   200-237      8.33  458.82  4.1e-05       40.0%     50.21
  WD 6:  Seg 24   238-281      8.50  465.85  3.3e-05       40.0%     52.91
  WD 7:  Seg 28   285-322      2.83  231.50  0.04623       10.0%     52.96
  WD 8:  Seg 33   333-371      3.26  249.15  0.02700       20.0%     35.14
  WD 9:  Seg 47   483-519      3.16  245.21  0.03046       27.5%     52.49
  WD10:  Seg 51   520-559      3.36  253.65  0.02352       12.5%     43.31

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     -MKM----LTKFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWD
   WD 2   43-81     -GTL----LHRFEDHEGPVRGLDFHPTQPIFVSAGDDYTIKVWS
   WD 3   85-123    -NKC----LYTLTGHLDYVRTVFFHRELPWIISASDDQTIRIWN
   WD 4  127-165    -RKE----IACLTGHNHFVMCAQFHPTDDLIVSASLDETIRIWD
   WD 5  200-237    VVKF----I--LEGHTRGVNWASFHPTLPLIVSGSDDRQVKLWR
   WD 6  238-281    MSATKAWEVDTCRGHTNNVDSVIFHPHQNLIISVGEDKTLRVWD
   WD 7  285-322    -RTP----VKQFKRENDRFWLIAAHPHINLFGAAH-DSGIMVFK
   WD 8  333-371    HQNQ----L-FFVNAEKQIQSFNFQKRVASLPYASLKGIGQPWD
   WD 9  483-519    QGKK----VSQLAVKN--VKYVSWSLDGQYVALMSKH-TITLAT
   WD10  520-559    KKLE----LINSMHETIRIKSAAWDETGVLIYSTLNHIRYSLLN

   WD40 Template    TGEC----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD