Input parameters:

  Query = YDL156W (Len=522)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YDL156W, Len=522):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPELTEFQKKRLENIKRNNDLLKKLHLSGVASQIKHEAGVLEKSRAPAKKKQKTTNTRATKSASPTLPTRRSRRLRGESA 80  
WD40-rpts                                                                                      

Query       81 DDVKGIPNVNDNQLLKMGSPDGQDKNFIDAIKEKPVIGDVKLSDLIKDEDESALLEKFKRFNNGNFSSGDFFEEIKKRQG 160 
WD40-rpts                                                                                      

Query      161 DVTGMDEFDLDLYDVFQPNEIKITYERISATYFHPAMEKKLIIAGDTSGTVGFWNVRDEPLADSEEDRMEEPDITRVKLF 240 
WD40-rpts                    (__________________WD 1_________________)               (_________

Query      241 TKNVGRIDCFPADTSKILLTSYDGSIRSVHLNNLQSEEVLTLKNEYDDSLGISDCQFSYENPNVLFLTTLGGEFTTFDTR 320 
WD40-rpts      ________WD 2_________________)           (________________WD 3_______________)  

Query      321 VKKSEYNLRRLADKKIGSMAINPMRPYEIATGSLDRTLKIWDTRNLVKKPEWSQYEDYPSHEIVSTYDSRLSVSAVSYSP 400 
WD40-rpts        (_________________WD 4_________________)                 (_________________WD 

Query      401 TDGTLVCNGYDDTIRLFDVKSRDHLSAKLEPKLTIQHNCQTGRWTSILKARFKPNKNVFAIANMKRAIDIYNSEGQQLAH 480 
WD40-rpts      5________________)              (_________________WD 6_________________)   (____

Query      481 LPTATVPAVISWHPLRNWIAGGNSSGKIFLFTDDSGTIKQEE 522 
WD40-rpts      ____________WD 7_______________)          

7 WD40-repeats found in QUERY=YDL156W (Len=522):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   175-215      5.73  351.43  0.00114       17.5%     41.66
  WD 2:  Seg  6   231-270      6.22  371.58  0.00061       20.0%     49.09
  WD 3:  Seg 11   282-318      5.95  360.28  0.00087       17.5%     42.92
  WD 4:  Seg 14   323-362      7.37  419.03  0.00014       22.5%     47.56
  WD 5:  Seg 17   380-418      8.10  449.13  5.5e-05       27.5%     51.67
  WD 6:  Seg 21   433-472      8.76  476.67  2.3e-05       10.0%     43.70
  WD 7:  Seg 24   476-512      6.19  370.23  0.00064       15.0%     45.26

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  175-215    VFQ-PNEIKITYERISATY-FHPAMEKK-LIIAGDTSGTVGFWN
   WD 2  231-270    -EPDITRVKLFTKNVGRIDCFPA--DTS-KILLTSYDGSIRSVH
   WD 3  282-318    ----LKNEYDDSLGISDCQ-FSY-ENPN-VLFLTTLGGEFTTFD
   WD 4  323-362    -KSEYNLRRLADKKIGSMA-INP--MRPYEIATGSLDRTLKIWD
   WD 5  380-418    -SHEIVSTYDSRLSVSAVS-YSP--TDG-TLVCNGYDDTIRLFD
   WD 6  433-472    LTIQHNCQTGRWTSILKAR-FKP--NKN-VFAIANMKRAIDIYN
   WD 7  476-512    -QQLAHLPTATVPAV--IS-WHP--LRN-WIAGGNSSGKIFLFT

   WD40 Template    TGECLRTLSGHTSGVTSVS-FSP--DGK-RLVSGSEDGTIKVWD