Input parameters:

  Query = YDL195W (Len=1273)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YDL195W, Len=1273):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVKLAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGA 80  
WD40-rpts                  (______________WD 1______________)         (_______________WD 2_____

Query       81 LDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV 160 
WD40-rpts      _________)(_____________________WD 3____________________)(______________________

Query      161 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 240 
WD40-rpts      _WD 4_______________________)         (___________________WD 5__________________

Query      241 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 320 
WD40-rpts      )(____________________WD 6___________________)   (_________________WD 7_________

Query      321 FDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK 400 
WD40-rpts      ________)(__________________WD 8_________________)                              

Query      401 GVSITNPKISGLESNTTLSEALKTKDFKPLINQRLVKVIDDVNEEDWNLLEKLSMDGTEEFLKEALAFDNDESDAQDDAN 480 
WD40-rpts                                                                                      

Query      481 NEKEDDGEEFFQQIETNFQPEGDFSLSGNIEQTISKNLVSGNIKSAVKNSLENDLLMEAMVIALDSNNERLKESVKNAYF 560 
WD40-rpts                                                                                      

Query      561 AKYGSKSSLSRILYSISKREVDDLVENLDVSQWKFISKAIQNLYPNDIAQRNEMLIKLGDRLKENGHRQDSLTLYLAAGS 640 
WD40-rpts                                                                                      

Query      641 LDKVASIWLSEFPDLEDKLKKDNKTIYEAHSECLTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINLTTSTGNFELAT 720 
WD40-rpts                                                                                      

Query      721 EFLNSLPSDNEEVKTEKARVLIASGKSLPAQNPATATTSKAKYTNAKTNKNVPVLPTPGMPSTTSIPSMQAPFYGMTPGA 800 
WD40-rpts                                                                                      

Query      801 SANALPPKPYVPATTTSAPVHTEGKYAPPSQPSMASPFVNKTNSSTRLNSFAPPPNPYATATVPATNVSTTSIPQNTFAP 880 
WD40-rpts                                                                                      

Query      881 IQPGMPIMGDYNAQSSSIPSQPPINAVSGQTPHLNRKANDGWNDLPLKVKEKPSRAKAVSVAPPNILSTPTPLNGIPANA 960 
WD40-rpts                                                                                      

Query      961 ASTMPPPPLSRAPSSVSMVSPPPLHKNSRVPSLVATSESPRASISNPYAPPQSSQQFPIGTISTANQTSNTAQVASSNPY 1040
WD40-rpts                                                                                      

Query     1041 APPPQQRVATPLSGGVPPAPLPKASNPYAPTATTQPNGSSYPPTGPYTNNHTMTSPPPVFNKPPTGPPPISMKKRSNKLA 1120
WD40-rpts                                                                                      

Query     1121 SIEQNPSQGATYPPTLSSSASPLQPSQPPTLASQVNTSAENVSHEIPADQQPIVDFLKEELARVTPLTPKEYSKQLKDCD 1200
WD40-rpts                                                                                      

Query     1201 KRLKILFYHLEKQDLLTQPTIDCLHDLVALMKEKKYKEAMVIHANIATNHAQEGGNWLTGVKRLIGIAEATLN 1273
WD40-rpts                                                                               

8 WD40-repeats found in QUERY=YDL195W (Len=1273):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-46       3.07  241.43  0.03418       17.5%     42.59
  WD 2:  Seg  4    56-90       3.72  268.53  0.01488       10.0%     44.61
  WD 3:  Seg  7    91-137      6.84  397.40  0.00027       37.5%     46.64
  WD 4:  Seg 10   138-189      3.97  278.80  0.01084       15.0%     41.71
  WD 5:  Seg 14   199-241      3.42  255.88  0.02196       22.5%     38.60
  WD 6:  Seg 17   242-286      5.98  361.89  0.00083       27.5%     41.60
  WD 7:  Seg 20   290-329      5.08  324.31  0.00265       22.5%     49.86
  WD 8:  Seg 24   330-370      3.22  247.77  0.02815       12.5%      3.88

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-46     -----------------------FA----WSHDKIPLLVSGTV-S-GT-VD-ANFST---DSSLELWS
   WD 2   56-90     IAS------LQV--------------------DSKFNDLDWSH-N-NK-II-AGALD---NGSLELYS
   WD 3   91-137    TNEANNAINSMA-----------RF----SNHSSSVKTVKFNAKQ-DN-VL-ASGGN---NGEIFIWD
   WD 4  138-189    MNK------CTESPSNYTPLTPGQS----MSSVDEVISLAWNQ-SLAH-VF-ASAGS---SNFASIWD
   WD 5  199-241    -LS------YTS-----------PN----SGIKQQLSVVEWHP-K-NSTRV-ATATGSDNDPSILIWD
   WD 6  242-286    LRN------ANT-----------PLQTLNQGHQKGILSLDWCHQD-EH-LL-LSSGR---DNTVLLWN
   WD 7  290-329    -AE------QLS-----------QF----PARGNWCFKTKFAP-E-AP-DLFACASF---DNKIEVQT
   WD 8  330-370    LQN------LTN-----------TL---DEQETETKQQESETD-F-WN-NV-SREES---KEKPSVFH

   WD40 Template    TGE------CLR-----------TL----SGHTSGVTSVSFSP-D-GK-RL-VSGSE---DGTIKVWD