Input parameters:

  Query = YDR030C (Len=506)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YDR030C, Len=506):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDPFLEFRVGNISLNEFYRRTIQSEFERILEDPLSNMKNYRFSKQSNYSTKEKTPLSIGVNCLDIDDTGQVLLGGGDDGS 80  
WD40-rpts                                                    (_________________WD 1____________

Query       81 LSIWGLDESLHRNDEGEQELINKRLNYIKRQPHQSDDEPAQIMGYKNKRTRINDNNTMRLVHSFQTQRNKYRMYRQSSAA 160 
WD40-rpts      ____)(______________________WD 2_____________________)   (___________________WD 

Query      161 VPVQRSHISNKTDSPIGFSETLSETDSEASISHHKYGITTLKWYKADNGMFFTGSNDKTVKIWDTNRFEAVQDINLGYKI 240 
WD40-rpts      3__________________)    (_________________WD 4_________________)   (____________

Query      241 NQIDNNVVDDSSLLVVASEDYYPRLIDLRTMNSGVTALGMGNQTRMQSEILCCKFNPVREQIIACGDMEGGVKLWDLRMR 320 
WD40-rpts      _____WD 5_________________)          (_________________WD 6________________)    

Query      321 NRLYSELKRNKNRFKTINNDDNDDQSDVYFSSNQSKAHLRCCSDIVWNSEGSELCSVGMDGKLNVWRPFTEILQPEGLAS 400 
WD40-rpts                                    (________________WD 7_______________)(____________

Query      401 YSQLGTQDLSRIKYKKRVSRRLLWFDKFLLCITDNGEVEIYNTEEKKLWNKLEYPMVNQVKKNQASHCQFSSMIVQTNIM 480 
WD40-rpts      _____________WD 8________________________)          (_____________________WD 9__

Query      481 NSVGLKLFFGTNNNTVSDGGSIFECS 506 
WD40-rpts      ___________________)      

9 WD40-repeats found in QUERY=YDR030C (Len=506):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    47-85       8.54  467.46  3.1e-05       20.0%     49.59
  WD 2:  Seg  4    86-134      4.94  318.57  0.00317       20.0%     36.12
  WD 3:  Seg  8   138-180      6.54  384.81  0.00041       12.5%     46.04
  WD 4:  Seg 12   185-224      8.57  468.69  3.0e-05       30.0%     48.98
  WD 5:  Seg 16   228-267      7.49  424.22  0.00012       22.5%     50.90
  WD 6:  Seg 21   278-316      7.38  419.65  0.00014       22.5%     40.53
  WD 7:  Seg 26   351-387      7.96  443.52  6.6e-05       20.0%     38.87
  WD 8:  Seg 29   388-442      5.15  327.57  0.00239       12.5%     39.87
  WD 9:  Seg 33   453-500      4.88  316.42  0.00338       12.5%     32.81

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   47-85     -NYST-KEKT-P---------------LSIG--------V--------N----CLDIDD-TGQV-LLGGGDDGSLSIWG
   WD 2   86-134    LDESLHRNDE-G---------------EQEL--------INKRLNYIKR----QPHQSD-DEPA-QIMGYKNKRTRIND
   WD 3  138-180    -MRLV-HSFQ-T---------------QRNK--------Y--------RMYRQSSAAVP-VQRS-HISNKTDSPIGFSE
   WD 4  185-224    -TDSE-ASIS-H---------------HKYG--------I--------T----TLKWYKADNGM-FFTGSNDKTVKIWD
   WD 5  228-267    -FEAV-QDINLG---------------YKIN--------Q--------I----DNNVVD-DSSL-LVVASEDYYPRLID
   WD 6  278-316    LG--M-GNQT-R---------------MQSE--------I--------L----CCKFNP-VREQIIACGDMEGGVKLWD
   WD 7  351-387    ---SS-NQSK-A---------------HLRC--------C--------S----DIVWNS-EGSE-LCSVGMDGKLNVWR
   WD 8  388-442    PFTEI-LQPE-GLASYSQLGTQDLSRIKYKK--------R--------V----SRRLLW-FDKF-LLCITDNGEVEIYN
   WD 9  453-500    EYPMV-NQVK-K---------------NQASHCQFSSMIV--------Q----TNIMNS-VGLK-LFFGTNNNTVSDGG

   WD40 Template    TGECL-RTLS-G---------------HTSG--------V--------T----SVSFSP-DGKR-LVSGSEDGTIKVWD