Input parameters:

  Query = YDR118W (Len=652)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YDR118W, Len=652):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSPINDYFIDYNPLFPIFATRIAKGLAIYRVSDHARLAVIPIRNINLVANYDWDTTTGKFLSIFFKDGTIRIHDIFKDG 80  
WD40-rpts                                      (___________________WD 1__________________)     

Query       81 RLVSFLRIPSTKISKGIWDRIPLRYEPNNRDFACNIIDDLPKLIRFVKDSKRINIVPYTQPNSLWRGPDEDDLDSNEKLD 160 
WD40-rpts                                                                                      

Query      161 VHVVFNEGNDKITVFFNGDYAVFLSVDNIENENSLKSIIKVQDGFYQCFYEDGTVQTLNLGPLLQSKSSVNLLNYIMVIK 240 
WD40-rpts                                                                                      

Query      241 ELIGYMLTHLEFINRELATPYLDFVKRLCDEAYGYGKLKSELEALFLLGEISCDLEDWLCNSVGEKNFKRWKYLGCEAYQ 320 
WD40-rpts                                                                                      

Query      321 KTVQILTLIFVPACERIIIYVEKLRAILQAFSIQNKLSYTSDLTAVEVLLKSSQKLLTMTLNSIIGLGRDETLFEKFFIW 400 
WD40-rpts                                                                                      

Query      401 FNDRLHEALDEDYKLKFQFEDDLYFGYDLLSYFDRILSKKGTEPSSIIDVKLYRDLINSMSDMEKDIAQSNVNSHIQQHI 480 
WD40-rpts                                                                                      

Query      481 LVDLKTDVFAQKYPSSQINLLDAIKLPKHNYIVYLIQVTKHNSAQEPFSEENKKKLYIGTLKDENLGIISKESSVKIPAL 560 
WD40-rpts                                                                                      

Query      561 FKSYRLSSTRFVPNRVHSLLRDIGLSDSNYHSSHVTDYRGENYENEEDDGTIAIPAYIRENRENDDFIACTAKVSVDGRS 640 
WD40-rpts                                                                                      

Query      641 ASLVFPKEKQNV 652 
WD40-rpts                  

1 WD40-repeats found in QUERY=YDR118W (Len=652):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    33-75       3.35  253.09  0.02392       22.5%     49.30

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-75     SDHARLAVIPIRNINLVANYDWDTTTGKFLSIFFKDGTIRIHD

   WD40 Template    TGECLRTLS--GHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD