Input parameters:

  Query = YDR128W (Len=1148)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YDR128W, Len=1148):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MCSSINEGPYNSPTFGKSLSLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPA 80  
WD40-rpts      (_______________________WD 1______________________)   (___________________WD 2__

Query       81 KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA 160 
WD40-rpts      ________________)          (_______________WD 3_______________)    (____________

Query      161 ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR 240 
WD40-rpts      _____WD 4________________)(___________________WD 5___________________)(_________

Query      241 TVTTNFPIWRGRYLPFGEGYCIMPMVGGNNAVYLINLCDDDDSEQNKKTKLQPIYAFKGHSDRVIDFLWRSRHTCDGDYD 320 
WD40-rpts      _________________WD 6_________________________)   (______________________WD 7___

Query      321 DREFQLVTWSKDCDLKLWPISDSIYGKVNFDRGKRLEEKLPDYDYCSYNKEPENRENVQKNEFRRLRENFVTTSGLKKNK 400 
WD40-rpts      __________________)(_______________________WD 8______________________)   (______

Query      401 TNHITWLSGIRMNSATSQEDLFNETKIQNLGEEVSAIGHKFPKVVFEKISVSTRELCLTLNGPWSEENPDDYIFLRISIN 480 
WD40-rpts      ___________WD 9________________)    (__________________WD10__________________)  

Query      481 FPLNYPNKGDPPKFTIEENSNLTMSKRQEILSNLATIGQKYTDSNLYCLEPCIRFVLGEKVSLEDIEEGQEPLLNFDIAD 560 
WD40-rpts                                                                                      

Query      561 HIDFEELSSLDSSYSDSQNPENLSSQSDIESYKEALVFPDTSNQGLDFGRNLALDTTPVPNGCGSCWTATGELFCFFANE 640 
WD40-rpts                                                                                      

Query      641 KKPEKKQNAIIKLSQKEAGVEKHPFKIEPQVLYDKEVDSSVITAADELKARPKRYVDTLGLGGGTNGDSRTYFDDETSSD 720 
WD40-rpts                                                                                      

Query      721 DSFDSVADDWDDILRNDIIVRTKIPILRGNFKAFSSVHSESGKTVESTKKNKNLVISKNFSSLLSDRKELALEYLFMDAT 800 
WD40-rpts                                                                                      

Query      801 PEGFARNNALVAEKFDLDEISHCWQILSDMLIDQSDYDPYTTIWNNHPMGIKWFIKEAIVYFERQQNLQMLAMLCCVILS 880 
WD40-rpts                                                                                      

Query      881 ARRKKIPARYYGQELENMEGTIVFNDNESQNTSFWKGSDAFSTRSRSSTVTPNFYGNHLRGKNIHGGDNSSIRSDDHHAR 960 
WD40-rpts                                                                                      

Query      961 LRTHNTLNGSSKFTEPAQKQGSRAISSSPFHSRMPDIKVELLHDDIIEAYEQEDLLHLEVSDIPKFQTYIYQYSKLLFRW 1040
WD40-rpts                                                                                      

Query     1041 GLPLERVKILKVSTDFRSSYSSQGIPPNNNKKSPYNGVLTHWIENNEFGEEKFLARNCNYCDLRVTRSSFICGNCQHVLH 1120
WD40-rpts                                                                                      

Query     1121 SSCARIWWEIGDECPSGCGCNCPEMFDA 1148
WD40-rpts                                  

10 WD40-repeats found in QUERY=YDR128W (Len=1148):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-51       3.62  264.10  0.01705       22.5%     44.78
  WD 2:  Seg  5    55-97       3.21  247.12  0.02872       15.0%     41.73
  WD 3:  Seg  9   108-143      6.58  386.48  0.00038       27.5%     43.44
  WD 4:  Seg 12   148-186      6.96  402.09  0.00024       20.0%     51.84
  WD 5:  Seg 16   187-230      7.82  437.49  7.9e-05       40.0%     51.30
  WD 6:  Seg 20   231-287      2.92  235.07  0.04148       10.0%     38.93
  WD 7:  Seg 24   291-339      6.10  366.52  0.00072       22.5%     46.14
  WD 8:  Seg 28   340-390      3.46  257.68  0.02078       10.0%     24.51
  WD 9:  Seg 30   394-432      3.52  260.21  0.01922        5.0%     12.67
  WD10:  Seg 32   437-478      3.65  265.46  0.01636        7.5%     18.11

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-51     MCS---S---I-----------NEGPYNSPTFGKSLSLKVDGG--FNAVSINP-SG-R--------------D--IVLASRQG-LYIID
   WD 2   55-97     -PF---T---P-----------P------------RWLHHITPWQVADVQWSP-HP-A--------------KPYWIVSTSNQKAIIWN
   WD 3  108-143    ----------------------F------------VLHGHSRA--ITDINFNP-QHPD--------------V--LATCSVDTYVHAWD
   WD 4  148-186    -HR---P---F-----------Y------------STSSWRSA--ASQVKWNY-KD-P--------------N--VLASSHGNDIFVWD
   WD 5  187-230    LRKGSTP---L-----------C------------SLKGHVSS--VNSIDFNRFKY-S--------------E--IMSSSNDGTVKFWD
   WD 6  231-287    YSK---STTES-----------K------------RTVTTNFP--IWRGRYLP-FG-EGYCIMPMVGGNNAVY--LINLCDDDDSEQNK
   WD 7  291-339    -LQ---P---I-----------Y------------AFKGHSDR--VIDFLWRS-RH-T----CDGDYDDREFQ--LVTWSKDCDLKLWP
   WD 8  340-390    ISD---S---IYGKVNFDRGKRL------------EEKLPDYD--YCSYNKEP-EN-R--------------E--NVQKNEFRRLRENF
   WD 9  394-432    -SG---L---K-----------K------------NKTNHITW--LSGIRMNS-AT-S--------------Q--EDLFNETKIQNLGE
   WD10  437-478    IGH---K---F-----------P----------KVVFEKISVS--TRELCLTL-NG-P--------------W--SEENPDDYIFLRIS

   WD40 Template    TGE---C---L-----------R------------TLSGHTSG--VTSVSFSP-DG-K--------------R--LVSGSEDGTIKVWD