Input parameters:

  Query = YDR142C (Len=375)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YDR142C, Len=375):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRYHMQGFSGYGVQYSPFFDNRLAVAAGSNFGLVGNGKLFILEIDRSGRIVEVNSFLTQDCLFDLAWNESHENQVLVAQ 80  
WD40-rpts                                                  (____________________WD 1___________

Query       81 GDGTLRLFDTTFKEFPIAIFKEHEREVFSCNWNLVNRQNFLSSSWDGSIKIWSPLRKQSLMTLTPRPLEITKMVDPLNAI 160 
WD40-rpts      ________)    (_________________WD 2_________________)                           

Query      161 ILKKKSFTGISKNRNCVYQAQFSPHDQNLVLSCSGNSYASLFDIRLPSGKNQNNFLVHSGLEALTCDFNKYRPYVVATGG 240 
WD40-rpts         (_________________WD 3_________________)     (__________________WD 4_________

Query      241 VDNAIRIWDIRMLNKNESATIKRTVPGQLHNSSCINEIPNAHGLAIRKVTWSPHHSNILMSASYDMTCRIWRDLSNDGAK 320 
WD40-rpts      ________)                       (_________________WD 5_________________)        

Query      321 ETYKTNSTDATKGSIFNFTQHSEFVFGADWSLWGKPGYVASTAWDGNLFVWNGLG 375 
WD40-rpts                 (__________________WD 6_________________)   

6 WD40-repeats found in QUERY=YDR142C (Len=375):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    45-89       5.34  335.37  0.00188       12.5%     48.11
  WD 2:  Seg 10    94-133      7.28  415.23  0.00016       25.0%     51.31
  WD 3:  Seg 16   164-203      6.01  362.77  0.00080       22.5%     47.70
  WD 4:  Seg 20   209-249      5.54  343.31  0.00147       20.0%     49.42
  WD 5:  Seg 25   273-312      6.95  401.67  0.00024       25.0%     40.78
  WD 6:  Seg 28   332-372      6.17  369.46  0.00065       25.0%     52.18

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   45-89     IDRSGRIVEVNSFLTQD-CLFDLAWNE-SHE-NQVLVAQGDGTLRLFD
   WD 2   94-133    -EFPIA----IFKEHER-EVFSCNWNLVNRQ--NFLSSSWDGSIKIWS
   WD 3  164-203    -KKSFT----GISKNRN-CVYQAQFSPHDQN--LVLSCSGNSYASLFD
   WD 4  209-249    -GKNQN----NFLVHSGLEALTCDFNKYRPY--VVATGGVDNAIRIWD
   WD 5  273-312    -SCINE----IPNAHGL-AIRKVTWSPHHSN--ILMSASYDMTCRIWR
   WD 6  332-372    -KGSIF----NFTQHSE-FVFGADWSL-WGKPGYVASTAWDGNLFVWN

   WD40 Template    TGECLR----TLSGHTS-GVTSVSFSP-DGK--RLVSGSEDGTIKVWD