Accession: YDR165W - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = YDR165W (Len=444)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YDR165W, Len=444):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSVIHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80  
WD40-rpts                                       (_________________________WD 1_________________

Query       81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 
WD40-rpts      _______)   (_________________WD 2_________________)(____________________WD 3____

Query      161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH 240 
WD40-rpts      ________________)       (__________________WD 4__________________)(_____________

Query      241 KHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 
WD40-rpts      _____WD 5__________________)   (_________________WD 6________________)          

Query      321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNN 400 
WD40-rpts            (_____________________WD 7____________________)                           

Query      401 EKSNEFDSAIIQSVQGDSNLVTKKEEIYPLYNVSSLRKHGEHYS 444 
WD40-rpts

7 WD40-repeats found in QUERY=YDR165W (Len=444):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    34-88       5.47  340.55  0.00160        7.5%     21.87
  WD 2:  Seg  6    92-131      6.17  369.50  0.00065       17.5%     34.34
  WD 3:  Seg  9   132-177      4.38  295.68  0.00643       15.0%     46.02
  WD 4:  Seg 13   185-226      7.21  412.34  0.00017       22.5%     42.85
  WD 5:  Seg 16   227-268      7.40  420.34  0.00013       32.5%     47.88
  WD 6:  Seg 20   272-310      5.35  335.72  0.00186       10.0%     25.35
  WD 7:  Seg 24   327-373      2.89  234.17  0.04263       10.0%     27.88

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   34-88     SP-------N------HW---EFAGKWSDDFDKIQESRNTTAKEQQGQSSENENE---NKK-LKSNKGDSIKRTA
   WD 2   92-131    -P-------S------PG---LGAPPIYSYIR---------------NLRLTSDE---SRLIACADSDKSLLVFD
   WD 3  132-177    VD-------KTSKNVLKL---RKRFCFSKRPN---------------AISIAEDD---TTV-IIADKFGDVYSID
   WD 4  185-226    -K-------F------TQ---EPILGHVSMLT---------------DVHLIKDSDGHQFI-ITSDRDEHIKISH
   WD 5  227-268    YP-------Q------CFIVDKWLFGHKHFVS---------------SICCGKDY---L-L-LSAGGDDKIFAWD
   WD 6  272-310    -G-------K------NL---STFDYNSLIKP---------------YLNDQHLA---PPR-FQNENNDIIEFAV
   WD 7  327-373    EATKCIIILE------MS---EKQKGDLALKQ---------------IITFPYNV---ISL-SAHNDEFQVTLDN

   WD40 Template    TG-------E------CL---RTLSGHTSGVT---------------SVSFSPDG---KRL-VSGSEDGTIKVWD