Input parameters:

  Query = YDR267C (Len=330)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YDR267C, Len=330):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80  
WD40-rpts        (________________WD 1________________)       (_________________WD 2___________

Query       81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 
WD40-rpts      _____)          (_________________WD 3________________)       (_________________

Query      161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 
WD40-rpts      WD 4________________)     (__________________WD 5_________________)             

Query      241 CEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 
WD40-rpts          (______________WD 6_____________)(_____________________WD 7_________________

Query      321 VNFWSLEKAA 330 
WD40-rpts      ____)     

7 WD40-repeats found in QUERY=YDR267C (Len=330):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-40       7.41  420.91  0.00013       25.0%     52.46
  WD 2:  Seg  5    48-86       9.01  487.05  1.7e-05       25.0%     52.08
  WD 3:  Seg  9    97-135      9.19  494.17  1.4e-05       30.0%     50.34
  WD 4:  Seg 13   143-181      9.66  513.55  7.4e-06       32.5%     49.39
  WD 5:  Seg 17   187-227      8.76  476.56  2.3e-05       42.5%     53.05
  WD 6:  Seg 22   245-277      6.16  368.98  0.00066       20.0%     45.10
  WD 7:  Seg 25   278-325      6.05  364.58  0.00076       25.0%     50.84

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-40     SIN------LIKSLKLYKEKIWSFD-FSQG----I-LATGSTDRKIKLVS
   WD 2   48-86     -LI------DVLDETAHKKAIRSVA-WRPHTS--L-LAAGSFDSTVSIWA
   WD 3   97-135    -MD------LLAIIEGHENEVKGVA-WSNDGY--Y-LATCSRDKSVWIWE
   WD 4  143-181    -YE------CISVLQEHSQDVKHVI-WHPSEA--L-LASSSYDDTVRIWK
   WD 5  187-227    -WE------CVAVLNGHEGTVWSSD-FDKTEGVFR-LCSGSDDSTVRVWK
   WD 6  245-277    ------------LPDVHKRQVYNVA-WGFNG---L-IASVGADGVLAVYE
   WD 7  278-325    EVDGEWKVFAKRALCHGVYEINVVKWLELNGK--TILATGGDDGIVNFWS

   WD40 Template    TGE------CLRTLSGHTSGVTSVS-FSPDGK--R-LVSGSEDGTIKVWD