Input parameters:

  Query = YDR324C (Len=776)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YDR324C, Len=776):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSSLLSVLKEKSRSLKIRNKPVKMTSQERMIVHRCRFVDFTPATITSLAFSHKSNINKLTPSDLRLAIGRSNGNIEIWN 80  
WD40-rpts                                              (_________________WD 1_________________)

Query       81 PRNNWFQEMVIEGGKDRSIEGLCWSNVNGESLRLFSIGGSTVVTEWDLATGLPLRNYDCNSGVIWSISINDSQDKLSVGC 160 
WD40-rpts           (__________________WD 2__________________)   (_________________WD 3________

Query      161 DNGTVVLIDISGGPGVLEHDTILMRQEARVLTLAWKKDDFVIGGCSDGRIRIWSAQKNDENMGRLLHTMKVDKAKKESTL 240 
WD40-rpts      ________)(____________________WD 4___________________)                 (________

Query      241 VWSVIYLPRTDQIASGDSTGSIKFWDFQFATLNQSFKAHDADVLCLTTDTDNNYVFSAGVDRKIFQFSQNTNKSQKNNRW 320 
WD40-rpts      _______WD 5______________)   (_________________WD 6________________)            

Query      321 VNSSNRLLHGNDIRAICAYQSKGADFLVSGGVEKTLVINSLTSFSNGNYRKMPTVEPYSKNVLVNKEQRLVVSWSESTVK 400 
WD40-rpts       (_________________WD 7________________)     (________________WD 8______________

Query      401 IWTMGTDSSTEQNYKLVCKLTLKDDQNISTCSLSPDGQVLVVGRPSTTKVFHLQPVGNKLKVTKLDNDLLLRTSTKLVKF 480 
WD40-rpts      __)(______________________WD 9______________________)   (___________________WD10

Query      481 IDNSKIVICSCEDDVFIVDLESEEDEKPQEVELLEVTSTKSSIKVPYINRINHLEVDQNIAVISRGCGVVDILDLKARIS 560 
WD40-rpts      __________________)   (_______________________WD11_______________________)  (___

Query      561 KPLARLNNFITAVHINTSRKSVVVITADNKIYEFNMNLNSEAENEDSESVLTQWSKNNTDNLPKEWKTLKENCVGIFSDI 640 
WD40-rpts      ______________WD12________________)                                             

Query      641 ENSSRLWFWGATWISRIDFDVDFPINKRRKQKKRTHEGLTITDESNFMNDEEDDEDDDIDMEISENLNVLLNQGNKIKST 720 
WD40-rpts                                                                                      

Query      721 DVQRNEESSGHFFFTDKYKPLLFVDLISSNELAIIERNPLTFHSKQKAFIQPKLVF 776 
WD40-rpts                                                              

12 WD40-repeats found in QUERY=YDR324C (Len=776):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    41-80       7.45  422.23  0.00013       20.0%     46.82
  WD 2:  Seg  6    86-127      5.95  360.43  0.00086       17.5%     56.74
  WD 3:  Seg 10   131-169      8.47  464.74  3.4e-05       25.0%     56.09
  WD 4:  Seg 14   170-214      6.40  378.92  0.00049       22.5%     45.52
  WD 5:  Seg 19   232-266      7.81  437.45  7.9e-05       27.5%     43.45
  WD 6:  Seg 22   270-308      7.94  442.62  6.7e-05       15.0%     56.06
  WD 7:  Seg 26   322-360      6.65  389.21  0.00035       22.5%     45.57
  WD 8:  Seg 30   366-403      5.99  362.24  0.00082       20.0%     48.85
  WD 9:  Seg 34   404-453      6.30  374.77  0.00055       25.0%     52.85
  WD10:  Seg 38   457-499      4.24  290.01  0.00767       15.0%     48.10
  WD11:  Seg 42   503-554      5.15  327.39  0.00241       20.0%     42.11
  WD12:  Seg 46   557-595      7.61  428.87  0.00010       17.5%     53.89

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   41-80     FT------P----------ATITSLAFSHKS-----NINK-------------LTP---SDLRLAIGRSNGNIEIWN
   WD 2   86-127    -F------Q----------EMVIEGGKDRSI-----EGLC-------------WSNVNGESLRLFSIGGSTVVTEWD
   WD 3  131-169    -G------L----------PLRNYDCNSGVI-----WSIS-------------IND---SQDKLSVGCDNGTVVLID
   WD 4  170-214    ISGGPGVLE----------HDTILMRQEARV-----LTLA-------------WKK---DDF-VIGGCSDGRIRIWS
   WD 5  232-266    ---------------------DKAKKESTLV-----WSVI-------------YLP---RTDQIASGDSTGSIKFWD
   WD 6  270-308    -A------T----------LNQSFKAHDADV-----LCLT-------------TDT---DNNYVFSAGVDRKIFQFS
   WD 7  322-360    -N------S----------SNRLLHGNDIRA-----ICAY-------------QSK---GADFLVSGGVEKTLVINS
   WD 8  366-403    -N------G----------NYRKMPTVEPYS-----KNVL-------------VNK---EQRLVVSWS-ESTVKIWT
   WD 9  404-453    MG------TDSSTEQNYKLVCKLTLKDDQNI-----STCS-------------LSP---DGQVLVVGRPSTTKVFHL
   WD10  457-499    -G------N----------KLKVTKLDNDLLLRTSTKLVK-------------FID---NSKIVICSC-EDDVFIVD
   WD11  503-554    -E------E----------DEKPQEVELLEV-----TSTKSSIKVPYINRINHLEV---DQNIAVISRGCGVVDILD
   WD12  557-595    -A------R----------ISKPLARLNNFI-----TAVH-------------INT---SRKSVVVITADNKIYEFN

   WD40 Template    TG------E----------CLRTLSGHTSGV-----TSVS-------------FSP---DGKRLVSGSEDGTIKVWD