Input parameters:
Query = YDR362C (Len=672)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (YDR362C, Len=672):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAVIPAKKRGRPRKSVVAEVPYDSLASPVSENSGSKRPRRNASKKAVANFAQLVHAGRDDVINTTQVNNVDDTDDDDFVL 80
WD40-rpts
Query 81 NDEGDGEESDNVEIEFENELESTKNEVADLNSSGSGASVRPSGRRNTVQKLRLKKNSTKNMKSSSPGSSLGQKGRPIRLL 160
WD40-rpts
Query 161 KDLSSARDKIERIYGLNKEKLLLLAKVKEGFETSVFDFPFKNIQPDSPYFVCLDPPCKKESAYNKVIGDKNRTVYHEINK 240
WD40-rpts
Query 241 TEFENMIKLRTKRLKLLIGEVDAEVSTGDKIEFPVLANGKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQY 320
WD40-rpts
Query 321 MDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIID 400
WD40-rpts (_______________________WD 1______________________)
Query 401 NATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT 480
WD40-rpts (_________________WD 2________________)(____________________WD 3______
Query 481 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIG 560
WD40-rpts ______________)(___________________WD 4___________________) (_________________
Query 561 VSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGI 640
WD40-rpts ___WD 5___________________)
Query 641 NITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 672
WD40-rpts
5 WD40-repeats found in QUERY=YDR362C (Len=672):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 11 347-397 3.71 267.71 0.01526 20.0% 45.10
WD 2: Seg 16 411-449 5.77 353.07 0.00109 25.0% 45.82
WD 3: Seg 20 450-495 4.11 284.35 0.00913 17.5% 44.90
WD 4: Seg 24 496-539 3.85 273.61 0.01272 10.0% 30.49
WD 5: Seg 28 543-587 5.95 360.49 0.00086 17.5% 44.63
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 347-397 NTS---TLHCVKVQT----IVHSFGEVWDLKW---HEGCHAPHLVGCLSFVSQEGTINFLE------
WD 2 411-449 CEK---PS-----LT----LSLADSLITTFDF---LSPTT-------VVCGFKNGFVAEFD------
WD 3 450-495 LTDPEVPS-----FY----DQVHDSYILSVSTAYSDFEDT------VVSTVAVDGYFYIFN------
WD 4 496-539 PKD---IA-----TTKTTVSRFRGSNLVPVVY---CPQIY------SYIYSDGASSLRAVP------
WD 5 543-587 -AF---AV-----HP----LVSRETTITAIGV---SRLHP------MVLAGSADGSLIITNAARRLL
WD40 Template TGE---CL-----RT----LSGHTSGVTSVSF---SPDGK------RLVSGSEDGTIKVWD------