Input parameters:

  Query = YDR364C (Len=455)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YDR364C, Len=455):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGLVDGYDTSSDSDLNFDEGKSVHEKKNGNLHEDTSYEPSSNNIHKRKSHFTKSELKRRRKTRKGDGPWGSWSSSDDETS 80  
WD40-rpts                                                                                      

Query       81 QASETQKEDQDIFVHALAEDNLDSEQIEVEEVSHFYGKSEKDYQGRGYLYPPNDVDVDLREERISFRCYLPKKVIRNYPG 160 
WD40-rpts                                  (__________________WD 1__________________)(_________

Query      161 HPEGTTALKFLPKTGHLILSGGNDHTIKIWDFYHDYECLRDFQGHNKPIKALRFTEDCQSFLSSSFDRSVKIWDTETGKV 240 
WD40-rpts      _________WD 2_________________)    (_________________WD 3________________)   (__

Query      241 KTRLHLNSTPADVESRPTNPHEFIVGLSNSKILHYDDRVSENQGLVQTYDHHLSSILALKYFPDGSKFISSSEDKTVRIW 320 
WD40-rpts      _______________WD 4________________)      (_________________WD 5________________

Query      321 ENQINVPIKQISDTAQHSMPFLNVHPSQNYFCAQSMDNRIYSFSLKPKYKRHPKKIFKGHSSAGYGISLAFSGDGRYICS 400 
WD40-rpts      )(___________________WD 6__________________)      (__________________WD 7_______

Query      401 GDSKSRLFTWDWNTSRLLNNIKIPGNKPITQVDWHPQETSKVICSGAAGKIYVCD 455 
WD40-rpts      __________)   (__________________WD 8_________________)

8 WD40-repeats found in QUERY=YDR364C (Len=455):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   109-150      4.19  287.54  0.00827       10.0%     31.36
  WD 2:  Seg  7   151-191     10.65  554.43  2.1e-06       40.0%     48.45
  WD 3:  Seg 10   196-234      9.94  525.20  5.2e-06       35.0%     55.54
  WD 4:  Seg 14   238-276      8.09  448.64  5.6e-05       15.0%     58.04
  WD 5:  Seg 18   283-321      9.50  507.26  9.1e-06       30.0%     50.96
  WD 6:  Seg 22   322-364      6.64  388.75  0.00036       10.0%     51.54
  WD 7:  Seg 26   371-411      7.61  429.07  0.00010       30.0%     47.71
  WD 8:  Seg 30   415-455      5.54  343.34  0.00147       20.0%     49.94

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  109-150    -V---EEVSHFY-GKSEKDYQG--RGYLYPPN-DV-DVDLREERISFRCYL
   WD 2  151-191    PK---KVIRNYP-GHPE---GT--TALKFLPKTGH-LILSGGNDHTIKIWD
   WD 3  196-234    -Y---ECLRDFQ-GHNK---PI--KALRFTED-CQ-SFLSSSFDRSVKIWD
   WD 4  238-276    -G---KVKTRLH-LNST---PA--DVESRPTN-PH-EFIVGLSNSKILHYD
   WD 5  283-321    -Q---GLVQTYD-HHLS---SI--LALKYFPD-GS-KFISSSEDKTVRIWE
   WD 6  322-364    NQINVPIKQISD-TAQH---SM--PFLNVHPS-QN-YFCAQSMDNRIYSFS
   WD 7  371-411    -R---HPKKIFK-GHSS---AGYGISLAFSGD-GR-YICSGDSKSRLFTWD
   WD 8  415-455    -S---RLLNNIKIPGNK---PI--TQVDWHPQ-ETSKVICSGAAGKIYVCD

   WD40 Template    TG---ECLRTLS-GHTS---GV--TSVSFSPD-GK-RLVSGSEDGTIKVWD