Input parameters:

  Query = YDR398W (Len=643)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YDR398W, Len=643):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSPVLQSAYDPSGQYLCYVTVALDKQRVGVQPTQRATSSGVDTVWNENFLYLEDSKLKVTCLKWVNLASSDTVAIILGM 80  
WD40-rpts                                                            (_______________WD 1______

Query       81 NNGEIWLYSVLANEVTYKFTTGNSYEIKDIDLMGNQLWCIDSSDAFYQFDLLQFKLLQHFRINNCVQLNKLTIVPAGDSV 160 
WD40-rpts      ________)(__________________WD 2_________________)(___________________WD 3______

Query      161 AQLLVASHSISLIDIEEKKVVMTFPGHVSPVSTLQVITNEFFISGAEGDRFLNVYDIHSGMTKCVLVAESDIKELSHSGQ 240 
WD40-rpts      _____________)   (_________________WD 4________________)   (________________WD 5

Query      241 ADSIAVTTEDGSLEIFVDPLVSSSTKKRGNKSKKSSKKIQIVSKDGRKVPIYNAFINKDLLNVSWLQNATMPYFKNLQWR 320 
WD40-rpts      ________________)                                                               

Query      321 EIPNEYTVEISLNWNNKNKSADRDLHGKDLASATNYVEGNARVTSGDNFKHVDDAIKSWERELTSLEQEQAKPPQANELL 400 
WD40-rpts                                                                                      

Query      401 TETFGDKLESSTVARISGKKTNLKGSNLKTATTTGTVTVILSQALQSNDHSLLETVLNNRDERVIRDTIFRLKPALAVIL 480 
WD40-rpts                                                                                      

Query      481 LERLAERIARQTHRQGPLNVWVKWCLIIHGGYLVSIPNLMSTLSSLHSTLKRRSDLLPRLLALDARLDCTINKFKTLNYE 560 
WD40-rpts                                                                                      

Query      561 AGDIHSSEPVVEEDEDDVEYNEELDDAGLIEDGEESYGSEEEEEGDSDNEEEQKHTSSKQDGRLETEQSDGEEEAGYSDV 640 
WD40-rpts                                                                                      

Query      641 EME 643 
WD40-rpts         

5 WD40-repeats found in QUERY=YDR398W (Len=643):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    55-89       4.84  314.69  0.00357       15.0%     32.94
  WD 2:  Seg  8    90-130      4.13  285.45  0.00883        7.5%     49.48
  WD 3:  Seg 12   131-174      3.38  254.17  0.02314       10.0%     50.74
  WD 4:  Seg 16   178-216      8.05  447.37  5.8e-05       20.0%     56.18
  WD 5:  Seg 20   220-257      5.48  341.20  0.00157       20.0%     56.69

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-89     --------DSKLKVTCLKWVNLASSDTVAIILGMNNG-EIWLYS
   WD 2   90-130    VLANEVTYKFTTGNSYEIKDIDLMGNQ--LWCIDSSD-AFYQFD
   WD 3  131-174    LLQFKLLQHFRINNCVQLNKLTIVPAGDSVAQLLVASHSISLID
   WD 4  178-216    -KK---VVMTFPGHVSPVSTLQVITNEFFISGAEGDR-FLNVYD
   WD 5  220-257    -GM---TKCVLVAE-SDIKELSHSGQADSIAVTTEDG-SLEIFV

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDG-TIKVWD