Input parameters:

  Query = YDR488C (Len=533)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YDR488C, Len=533):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MERLKQLEEKRRQLKELRERRKQASLFPGSETMGHHPTEVHAKATMVSVSVQTDMEEGSKIQEPQSAYLRRKEVITYDKG 80  
WD40-rpts                                                                                      

Query       81 IQTDQIEEEQLQENENHTTTDAVAIETTAADENNKDKAENDQPRLELAKPFLVEEAAATLSNASFARLETEVSASGQQAP 160 
WD40-rpts                                                                                      

Query      161 SNMQQDKDNLMQWNMVSENLQSETDCDCIAQEYDPGKGVLVVVYLRLPPADLQYASSEAAWSVVNVVKCDNASGRNGLLI 240 
WD40-rpts                                                                                      

Query      241 DMVEFRGTRIMTATILRRYHPESNVISILLATLTGKIILYELRLKQKKPETPVVYVVQRNMVARHYFQHPVVAVIETSSV 320 
WD40-rpts                                                                 (_________________WD 

Query      321 QDQERVLVAADNGNIMELSCLDLTVLRKPQQLRPVPLSQLLSLENDTCTYTERLQRLAKFDEVGIACMAYTSEDPQYVWI 400 
WD40-rpts      1_________________)                                                             

Query      401 GGEDGGIYKVFWDQPGPLYLSLDNNGFQPAENHSTRVTGLEFHWDDARRLMLLLSCSTDWTVRLWDARAGKAIIGAPLLL 480 
WD40-rpts                             (___________________WD 2__________________)              

Query      481 GGPVLRARWLEKNNGGENSRTLRCQVWCADGRLVVVNWAFDAKTSLYTATVIS 533 
WD40-rpts                                                           

2 WD40-repeats found in QUERY=YDR488C (Len=533):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   300-339      4.32  293.22  0.00694       15.0%     33.54
  WD 2:  Seg 17   424-466      4.75  310.72  0.00404       32.5%     39.32

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  300-339    NMVARHYFQHPVVAVIETSSVQDQER----VLVAADNGNIMELS
   WD 2  424-466    -NNGFQPAENHSTRVTGLEFHWDDARRLMLLLSCSTDWTVRLWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKR----LVSGSEDGTIKVWD