Input parameters:

  Query = YEL056W (Len=401)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YEL056W, Len=401):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENQEKPLSVDEEYDLWKSNVPLMYDFVSETRLTWPSLTVQWLPTPVQELDGGFIKQELIIGTHTSGEEENYLKFAEINL 80  
WD40-rpts                         (___________________WD 1__________________)  (_______________

Query       81 PKEILSNEDPQEEAGEEYQSSLPAPRSNIRITAKYEHEEEITRARYMPQDPNIVATINGQGTVFLYSRSEGLQSTLKFHK 160 
WD40-rpts      __WD 2_________________)          (______________WD 3_____________)(____________

Query      161 DNGYALSFSTLVKGRLLSGSDDHTVALWEVGSGGDPTKPVRTWNDLHSDIINDNKWHNFNKDLFGTVSEDSLLKINDVRA 240 
WD40-rpts      ______WD 4__________________)(_____________________WD 5_____________________)   

Query      241 NNTTIDTVKCPQPFNTLAFSHHSSNLLAAAGMDSYVYLYDLRNMKEPLHHMSGHEDAVNNLEFSTHVDGVVVSSGSDNRL 320 
WD40-rpts      (_________________WD 6_________________)    (_________________WD 7______________

Query      321 MMWDLKQIGAEQTPDDAEDGVPELIMVHAGHRSSVNDFDLNPQIPWLVASAEEENILQVWKCSHSLPIVGGPPKVNKDII 400 
WD40-rpts      ___)                 (_________________WD 8_________________)                   

Query      401 S 401 
WD40-rpts       

8 WD40-repeats found in QUERY=YEL056W (Len=401):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    20-62       2.96  237.07  0.03904       10.0%     24.81
  WD 2:  Seg  4    65-104      4.20  288.31  0.00808        5.0%     -21.77
  WD 3:  Seg  6   115-147      4.42  297.16  0.00614       15.0%     46.57
  WD 4:  Seg  9   148-189      7.57  427.36  0.00011       40.0%     48.96
  WD 5:  Seg 12   190-237      5.45  339.72  0.00164       17.5%     53.11
  WD 6:  Seg 16   241-280      6.25  372.97  0.00059       12.5%     55.86
  WD 7:  Seg 20   285-324      7.45  422.42  0.00013       32.5%     51.70
  WD 8:  Seg 24   342-381      5.76  352.44  0.00111       25.0%     55.98

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   20-62     NVP-------LMYDFVSETRLTWPSLTVQWLP-TPV-QELDGGFIKQELIIG
   WD 2   65-104    TSG-------EEENYLKFAE---INLPKEILS-NED-PQEEAGEEYQSSLPA
   WD 3  115-147    ---------------YEHEE---EITRARYMPQDPN-IVATINGQGTVFLYS
   WD 4  148-189    RSE------GLQSTLKFHKD---NGYALSFST-LVKGRLLSGSDDHTVALWE
   WD 5  190-237    VGSGGDPTKPVRTWNDLHSD---IINDNKWHNFNKD-LFGTVSEDSLLKIND
   WD 6  241-280    -NN-------TTIDTVKCPQ---PFNTLAFSHHSSN-LLAAAGMDSYVYLYD
   WD 7  285-324    -KE-------PLHHMSGHED---AVNNLEFSTHVDG-VVVSSGSDNRLMMWD
   WD 8  342-381    -PE-------LIMVHAGHRS---SVNDFDLNP-QIPWLVASAEEENILQVWK

   WD40 Template    TGE-------CLRTLSGHTS---GVTSVSFSP-DGK-RLVSGSEDGTIKVWD