Input parameters:

  Query = YER066W (Len=185)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YER066W, Len=185):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENIRNNGECSYATNSASPCAKILGAMYTLRGHRALVGLLG 80  
WD40-rpts      (_________________WD 1________________)        (_______________________WD 2_____

Query       81 LSDKFLVSASVDGSIRCWDANTYFLKHFFDHTQLNTITALHVSDEVLVSGSEGLLNIYDLNSGLLVRSDTLSGADNVWNV 160 
WD40-rpts      __________________)(_________________WD 3_________________)                     

Query      161 SFKDNTLVAAVERDKRNLLEILDFS 185 
WD40-rpts                               

3 WD40-repeats found in QUERY=YER066W (Len=185):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39      10.49  547.81  2.6e-06       42.5%     54.74
  WD 2:  Seg  5    48-99       6.91  399.92  0.00025       37.5%     39.68
  WD 3:  Seg  8   100-139      7.66  431.22  9.6e-05       27.5%     49.45

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     -MK--------------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD
   WD 2   48-99     ECSYATNSASPCAKILGAMYTLRGHRALVGLLGLSDK--FLVSASVDGSIRCWD
   WD 3  100-139    ANT-------------YFLKHFFDHTQLNTITALHVSDEVLVSGS-EGLLNIYD

   WD40 Template    TGE--------------CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD