Input parameters:

  Query = YER082C (Len=554)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YER082C, Len=554):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGHKKNGHRRQIKERENQNKFERSTYTNNAKNNHTQTKDKKLRAGLKKIDEQYKKAVSSAAATDYLLPESNGYLEPENEL 80  
WD40-rpts                                                                                      

Query       81 EKTFKVQQSEIKSSVDVSTANKALDLSLKEFGPYHIKYAKNGTHLLITGRKGHVASMDWRKGQLRAELFLNETCHSATYL 160 
WD40-rpts                         (_________________WD 1________________)   (________________WD

Query      161 QNEQYFAVAQKKYTFIYDHEGTELHRLKQHIEARHLDFLPYHYLLVTAGETGWLKYHDVSTGQLVSELRTKAGPTMAMAQ 240 
WD40-rpts       2_______________)  (________________WD 3________________)   (_________________W

Query      241 NPWNAVMHLGHSNGTVSLWSPSMPEPLVKLLSARGPVNSIAIDRSGYYMATTGADRSMKIWDIRNFKQLHSVESLPTPGT 320 
WD40-rpts      D 4________________)   (_________________WD 5________________)   (______________

Query      321 NVSISDTGLLALSRGPHVTLWKDALKLSGDSKPCFGSMGGNPHRNTPYMSHLFAGNKVENLGFVPFEDLLGVGHQTGITN 400 
WD40-rpts      __WD 6_______________)                      (_________________WD 7______________

Query      401 LIVPGAGEANYDALELNPFETKKQRQEQEVRTLLNKLPADTITLDPNSIGSVDKRSSTIRLNAKDLAQTTMDANNKAKTN 480 
WD40-rpts      __)                                                                             

Query      481 SDIPDVKPDVKGKNSGLRSFLRKKTQNVIDERKLRVQKQLDKEKNIRKRNHQIKQGLISEDHKDVIEEALSRFG 554 
WD40-rpts                                                                                

7 WD40-repeats found in QUERY=YER082C (Len=554):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   100-138      6.37  377.72  0.00051       17.5%     52.11
  WD 2:  Seg  7   142-178      3.14  244.40  0.03122       10.0%     52.68
  WD 3:  Seg 11   181-218      6.43  380.24  0.00047       30.0%     54.99
  WD 4:  Seg 15   222-260      7.26  414.36  0.00016       17.5%     53.28
  WD 5:  Seg 19   264-302      8.43  463.08  3.6e-05       25.0%     54.38
  WD 6:  Seg 23   306-342      5.34  335.04  0.00190       22.5%     46.59
  WD 7:  Seg 27   365-403      4.07  282.94  0.00954       15.0%     46.67

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  100-138    ANKALDLSLKEFGPYHIKYAKNGTHLLITGRKGHVASMD
   WD 2  142-178    GQLRAELFLNET-CHSATYLQNEQYFAVAQ-KKYTFIYD
   WD 3  181-218    GTELHRLKQHIE-ARHLDFLPYHYLLVTAGETGWLKYHD
   WD 4  222-260    GQLVSELRTKAGPTMAMAQNPWNAVMHLGHSNGTVSLWS
   WD 5  264-302    PEPLVKLLSARGPVNSIAIDRSGYYMATTGADRSMKIWD
   WD 6  306-342    FKQLHSVESLPTPGTNVSISDTG--LLALSRGPHVTLWK
   WD 7  365-403    NTPYMSHLFAGNKVENLGFVPFEDLLGVGHQTGITNLIV

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD