Input parameters:

  Query = YER107C (Len=365)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YER107C, Len=365):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSFFNRSNTTSALGTSTAMANEKDLANDIVINSPAEDSISDIAFSPQQDFMFSASSWDGKVRIWDVQNGVPQGRAQHESS 80  
WD40-rpts                               (_________________WD 1_________________)(______________

Query       81 SPVLCTRWSNDGTKVASGGCDNALKLYDIASGQTQQIGMHSAPIKVLRFVQCGPSNTECIVTGSWDKTIKYWDMRQPQPV 160 
WD40-rpts      _____WD 2__________________)(____________________WD 3___________________)   (___

Query      161 STVMMPERVYSMDNKQSLLVVATAERHIAIINLANPTTIFKATTSPLKWQTRCVACYNEADGYAIGSVEGRCSIRYIDDG 240 
WD40-rpts      ____________WD 4_______________)                          (________________WD 5_

Query      241 MQKKSGFSFKCHRQTNPNRAPGSNGQSLVYPVNSIAFHPLYGTFVTAGGDGTFNFWDKNQRHRLKGYPTLQASIPVCSFN 320 
WD40-rpts      _______________)(__________________WD 6_________________)   (___________________

Query      321 RNGSVFAYALSYDWHQGHMGNRPDYPNVIRLHATTDEEVKEKKKR 365 
WD40-rpts      _____WD 7_______________________)            

7 WD40-repeats found in QUERY=YER107C (Len=365):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    26-65       7.15  410.18  0.00018       25.0%     52.22
  WD 2:  Seg  6    66-108      8.08  448.50  5.6e-05       27.5%     52.52
  WD 3:  Seg 10   109-153      7.49  424.18  0.00012       30.0%     54.48
  WD 4:  Seg 14   157-192      5.12  325.98  0.00252       12.5%     51.36
  WD 5:  Seg 20   219-256      5.73  351.39  0.00114       17.5%     41.04
  WD 6:  Seg 24   257-297      8.13  450.58  5.3e-05       25.0%     40.99
  WD 7:  Seg 27   301-353      5.06  323.74  0.00270       12.5%     51.96

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   26-65     -AN-D-I---VINSPAEDSISDIAFSPQQ----DFMFSASS-------------WDGKVRIWD
   WD 2   66-108    VQN-G-VPQGRAQHESSSPVLCTRWSNDG----TKVASGGC--------------DNALKLYD
   WD 3  109-153    IASGQ-T---QQIGMHSAPIKVLRFVQCGPSNTECIVTGSW--------------DKTIKYWD
   WD 4  157-192    -PQ-P-V---STVMMP---ERVYSMDNKQ----SLLVVATA--------------ERHIAIIN
   WD 5  219-256    EAD-G-Y---AI--GSVEGRCSIRYIDDG----MQKKSGFS--------------FKCHRQTN
   WD 6  257-297    PNR-APG---SNGQSLVYPVNSIAFHPLY----GTFVTAGG--------------DGTFNFWD
   WD 7  301-353    -RH-R-L---KGYPTLQASIPVCSFNRNG----SVFAYALSYDWHQGHMGNRPDYPNVIRLHA

   WD40 Template    TGE-C-L---RTLSGHTSGVTSVSFSPDG----KRLVSGSE--------------DGTIKVWD