Input parameters:

  Query = YER124C (Len=573)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YER124C, Len=573):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQDTKYYEPTNIFRQPAINIKKRSDKKRILQSMMTLSTYKKTWQNNTSKMNSPILRKASDNFNDYYTTKKLKSDYWKLYG 80  
WD40-rpts                                                                                      

Query       81 VDESELSIPSDMSIVDNILLVSTMNEKDNLKLFEISAEKKLKELQTITVPGKPITCICLLPMVDFPPQIFPSSQINPNHN 160 
WD40-rpts                            (_______________________WD 1_______________________)      

Query      161 QLILTGHQDGIVNLIATSTYKGCAKIIKRFNHNKFLKSTVSTSIPILEITPKTAPILKVSPWNKTGFVSLLNDSLFIYDL 240 
WD40-rpts                                                (________________WD 2_______________) 

Query      241 KSNLDCIKTPIFLQSYPGINSFAVNEFHDPFLLALVGSKFGPNGISLLDLRTNLYIPDILDNSISAGCGKDHLQRKNTSL 320 
WD40-rpts                (_________________WD 3________________)   (______________________WD 4_

Query      321 DCVWISNHHVAQSLNDKIQIWDIQSCDGKPVCELYAKKGYIESLKFNENTGALYSSDDQGFVICWDLQNLQNMKYGELVH 400 
WD40-rpts      _____________________)     (_________________WD 5________________)              

Query      401 GFNSISLDSESELLLTKQVFQCGNIIVSGMSDKNICLKSNDTKANGKGCGFLFLDMANDGSLVTLDNFCELGLHQICQVQ 480 
WD40-rpts      (_________________WD 6________________)(_______________WD 7_______________)     

Query      481 FNVDTGKIIDGNGTGKSGISDSSMLSLSNESDHSMTETSDDMFSNSGNWDCSSANTVSEGRLNDDQEDIVFTKRMYSVND 560 
WD40-rpts                                                                                      

Query      561 VHLSGSTIDTTVV 573 
WD40-rpts                   

7 WD40-repeats found in QUERY=YER124C (Len=573):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   103-154      3.50  259.43  0.01969        7.5%     -15.56
  WD 2:  Seg 10   203-239      3.96  278.27  0.01102       10.0%     41.85
  WD 3:  Seg 14   251-289      3.43  256.30  0.02168       12.5%     31.63
  WD 4:  Seg 17   293-342      3.46  257.63  0.02081       17.5%     29.56
  WD 5:  Seg 20   348-386      8.90  482.13  2.0e-05       22.5%     53.15
  WD 6:  Seg 24   401-439      4.22  289.18  0.00786       20.0%     45.90
  WD 7:  Seg 28   440-475      4.33  293.73  0.00683       10.0%     30.47

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  103-154    TMNEKDNLKLFEISAEKKLKELQTITV-----------PGKPITCICLLPM-----VDFPPQIFPSSQ
   WD 2  203-239    -SIPILEITPKTAP------------I-----------LKVSPWNKTGFVS-------LLNDSLFIYD
   WD 3  251-289    ------IFLQSYPG------------I-----------NSFAVNEFHDPFLLALVGSKFGPNGISLLD
   WD 4  293-342    -NLYIPDILDNSIS------------AGCGKDHLQRKNTSLDCVWISNHHV-----AQSLNDKIQIWD
   WD 5  348-386    -GKPVCELYAKKGY------------I-----------ESLKFNENTGALY-----SSDDQGFVICWD
   WD 6  401-439    -GFNSISLDSESEL------------L-----------LTKQVFQCGNIIV-----SGMSDKNICLKS
   WD 7  440-475    ---NDTKANGKGCG------------F-----------LFLDMANDGSLVT-----LDNFC-ELGLHQ

   WD40 Template    TGECLRTLSGHTSG------------V-----------TSVSFSPDGKRLV-----SGSEDGTIKVWD