Input parameters:

  Query = YFL009W (Len=779)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YFL009W, Len=779):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGSFPLAEFPLRDIPVPYSYRVSGGIASSGSVTALVTAAGTHRNSSTAKTVETEDGEEDIDEYQRKRAAGSGESTPERSD 80  
WD40-rpts                                                                                      

Query       81 FKRVKHDNHKTLHPVNLQNTGAASVDNDGLHNLTDISNDAEKLLMSVDDGSAAPSTLSVNMGVASHNVAAPTTVNAATIT 160 
WD40-rpts                                                                                      

Query      161 GSDVSNNVNSATINNPMEEGALPLSPTASSPGTTTPLAKTTKTINNNNNIADLIESKDSIISPEYLSDEIFSAINNNLPH 240 
WD40-rpts                                                                                      

Query      241 AYFKNLLFRLVANMDRSELSDLGTLIKDNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 320 
WD40-rpts                                                                                      

Query      321 ISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGAD 400 
WD40-rpts        (___________________WD 1___________________)    (________________WD 2_________

Query      401 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFKGHNSTVRCLDIVEYKNIKYI 480 
WD40-rpts      _______)   (________________WD 3________________)   (__________________WD 4_____

Query      481 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM 560 
WD40-rpts      ____________)                          (________________WD 5_______________)   (

Query      561 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENIWNNGECSYATNSASPCAKILGAMYTLQGHTALVGLLRL 640 
WD40-rpts      _________________WD 6________________)                       (________________WD

Query      641 SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVN 720 
WD40-rpts       7_______________)(_________________WD 8_________________)     (________________

Query      721 FKGKTLVAAVEKDGQSFLEILDFSKASKINYVSNPVNSSSSSLESISTSLGLTRTTIIP 779 
WD40-rpts      _WD 9________________)                                     

9 WD40-repeats found in QUERY=YFL009W (Len=779):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   323-366      3.90  275.68  0.01193       17.5%     16.54
  WD 2:  Seg  4   371-408      6.17  369.60  0.00065       25.0%     48.01
  WD 3:  Seg  8   412-449      9.04  487.96  1.6e-05       45.0%     53.91
  WD 4:  Seg 12   453-493      8.16  451.88  5.1e-05       35.0%     50.62
  WD 5:  Seg 17   520-556      7.86  439.40  7.4e-05       40.0%     49.02
  WD 6:  Seg 21   560-598     10.27  539.00  3.4e-06       42.5%     57.91
  WD 7:  Seg 25   622-658      6.03  363.70  0.00078       40.0%     44.76
  WD 8:  Seg 28   659-698      5.69  349.68  0.00121       20.0%     50.89
  WD 9:  Seg 32   704-742      3.37  253.79  0.02342       10.0%     41.06

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  323-366    ENFVSPK-GFNSLNLKLSQKY--PKLSQQDRLRLSFLENIFI-LKNWY
   WD 2  371-408    -V----P-QRTTLRGHMTSVI--TC-LQFEDNYVITGADDKM-IRVYD
   WD 3  412-449    -K----K-FLLQLSGHDGGVW--ALKYA-HGGILVSGSTDRT-VRVWD
   WD 4  453-493    -G----C-CTHVFKGHNSTVRCLDIVEYKNIKYIVTGSRDNT-LHVWK
   WD 5  520-556    -P----Y-FVGVLRGHMASVR--TV--SGHGNIVVSGSYDNT-LIVWD
   WD 6  560-598    -M----K-CLYILSGHTDRIY--STIYDHERKRCISASMDTT-IRIWD
   WD 7  622-658    -L----G-AMYTLQGHTALVG--LLRLS--DKFLVSAAADGS-IRGWD
   WD 8  659-698    AN----DYSRKFSYHHTNLSA--ITTFYVSDNILVSGS-ENQ-FNIYN
   WD 9  704-742    ------L-VHANILKDADQIW--SVNFKGKTLVAAVEKDGQSFLEILD

   WD40 Template    TG----E-CLRTLSGHTSGVT--SVSFSPDGKRLVSGSEDGT-IKVWD