Input parameters:
Query = YFL059W (Len=298)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (YFL059W, Len=298):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSEFKVKTGLAQMLKGGVIMDVVTPEQAIIAERAGACAVMALERIPADMRKSGQVCRMSDPRMIKEIMEAVSIPVMAKVR 80
WD40-rpts (______________________________________WD 1_______________________
Query 81 IGHFVEAQILEELQVDYIDESEVLTPADWTHHIEKHNFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKH 160
WD40-rpts _______________)
Query 161 ITKIKAEIQQYKENLKTESDFAAKATELRVPVDLLKTTLSEGKLPVVNFAAGGVATPADAALLMQLGCEGVFVGSGIFKS 240
WD40-rpts
Query 241 SDPEKLACAIVEATTHYDNPAKLLQVSSDLGDLMGGISIQSINEAGGKNGARLSEIGW 298
WD40-rpts
1 WD40-repeats found in QUERY=YFL059W (Len=298):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 15-96 2.84 232.04 0.04547 17.5% 19.61
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 15-96 KGGVIMDVVTPEQAIIAERAGACAVMALERIPADMRKSGQ--VCRMSDPRMIKEIMEAVSIPVMAKVRIGHFVEAQILEELQVD
WD40 Template TGECLRTLSG----------HTSGVTSVSFSP-----DGKRLVSGSED----------------GTIKVW-------------D