Input parameters:

  Query = YFR021W (Len=500)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YFR021W, Len=500):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDSSPTINFINFNQTGTCISLGTSKGFKIFNCEPFGKFYSEDSGGYAIVEMLFSTSLLALVGIGDQPALSPRRLRIINT 80  
WD40-rpts      (_____________WD 1_____________)   (___________________WD 2___________________) 

Query       81 KKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIETNPNPRGLMAMSPSVANSYLVYPSPPKVINSE 160 
WD40-rpts        (_______________WD 3______________)                                     (_____

Query      161 IKAHATTNNITLSVGGNTETSFKRDQQDAGHSDISDLDQYSSFTKRDDADPTSSNGGNSSIIKNGDVIVFNLETLQPTMV 240 
WD40-rpts      ____________WD 4________________)   (_______________WD 5______________)   (_____

Query      241 IEAHKGEIAAMAISFDGTLMATASDKGTIIRVFDIETGDKIYQFRRGTYATRIYSISFSEDSQYLAVTGSSKTVHIFKLG 320 
WD40-rpts      ____________WD 6_________________)   (__________________WD 7_________________)(_

Query      321 HSMSNNKLDSDDSNMEEAAADDSSLDTTSIDALSDEENPTRLAREPYVDASRKTMGRMIRYSSQKLSRRAARTLGQIFPI 400 
WD40-rpts      ________________WD 8_________________)                                          

Query      401 KVTSLLESSRHFASLKLPVETNSHVMTISSIGSPIDIDTSEYPELFETGNSASTESYHEPVMKMVPIRVVSSDGYLYNFV 480 
WD40-rpts                                                                                      

Query      481 MDPERGGDCLILSQYSILMD 500 
WD40-rpts                          

8 WD40-repeats found in QUERY=YFR021W (Len=500):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-32       4.91  317.67  0.00325       12.5%     43.14
  WD 2:  Seg  4    36-79       5.06  323.69  0.00270       10.0%     37.30
  WD 3:  Seg  8    83-117      3.74  268.96  0.01469       15.0%     47.08
  WD 4:  Seg 15   155-193      5.27  332.37  0.00206        5.0%     30.88
  WD 5:  Seg 18   197-231      3.88  275.06  0.01216        7.5%     17.43
  WD 6:  Seg 20   235-274      7.80  436.68  8.1e-05       25.0%     54.82
  WD 7:  Seg 24   278-318      7.18  411.20  0.00018       20.0%     57.13
  WD 8:  Seg 28   319-358      5.58  345.33  0.00138       12.5%     -12.51

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-32     -------M--SDSSPTINFINFNQTGTCISLGT------SKG-FKIFN
   WD 2   36-79     -FGKFYSE--DSGGYAIVEMLFSTSLLALVGIGDQPALSPRR-LRIIN
   WD 3   83-117    -HSIICEV--TFPTS-ILSVKMNKSRLVVLL--------QEQ-IYIYD
   WD 4  155-193    -KVINSEI--KAHATTNNITLSVGGNTETSFKRD-----QQD-AGHSD
   WD 5  197-231    -LDQYSSF--TKRDDADPTSSNGGNSSIIKNGD----------VIVFN
   WD 6  235-274    -LQPTMVI--EAHKGEIAAMAISFDGTLMATASD-----KGTIIRVFD
   WD 7  278-318    -GDKIYQFRRGTYATRIYSISFSEDSQYLAVTGS-----SKT-VHIFK
   WD 8  319-358    LGHSMSNN--KLDSDDSNMEEAAADDSSLDTTSI-----DAL-SDEEN

   WD40 Template    TGECLRTL--SGHTSGVTSVSFSPDGKRLVSGSE-----DGT-IKVWD