Input parameters:
Query = YFR029W (Len=678)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (YFR029W, Len=678):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MHSHRQKWGRQTDIARVLDDIEHDLYLPQRLSLDGATGTDESHVQYGIVKDCSVLTCGCCISESLFNDLCRETSNKQTAC 80
WD40-rpts
Query 81 PICQRENVRLLSAIKPLRDLARQIDFFRSTTGQGESESDELPAIVKTSPSSSSLSLTPSRSSSTAGLEADNKTLSDPTVK 160
WD40-rpts
Query 161 EKSSLLELFHIVASKMHNANTEVGSDHPLTTGTTRDQEEHTTKENYSSSLLEPNYDDHANWKILDNASNTRTVPIDNNFS 240
WD40-rpts
Query 241 LMSTDVTIPSTANYQTNSAHDLDEEKEYFFANCFPMYRKKFQFNTHPKFLGTKSKLFINQSISPDCTKFALITEHKWEIY 320
WD40-rpts
Query 321 SINPKDNSPQLVSCGKSSGEYGPNFNQLTEQSSSSLSTTSQASKKKKKNWSQRFCKLSNDFLIISGSQNILNVHDIHQNG 400
WD40-rpts
Query 401 KLIYTYVSRFPIRCIDIDPRSQIIAYGITGKDRHTGAEQALVVIQQITRNKVTLEPEFPPPITITLPYRDPINTIQLSHD 480
WD40-rpts
Query 481 AKYLTCSTALESRFLIISLQKINEPRLIMKSVRSIDTSLESEGITDTKLFPGNPNLMCITSTAFNSSPLVINTKITQING 560
WD40-rpts
Query 561 VRTVAQPSMLIRVDEIGCKIHKCEISPRNDAIAFLDRNGSVYIMCAPTMMDNNEKRRTILVETVANAYRAYESATLRFNP 640
WD40-rpts (_________________WD 1_________________)(________________________WD 2______
Query 641 EGNKLYILDRKGTFFVEDFAYGLPQSREITKCKQIFHK 678
WD40-rpts _________________)
2 WD40-repeats found in QUERY=YFR029W (Len=678):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 23 566-605 3.55 261.32 0.01858 10.0% 48.38
WD 2: Seg 27 606-658 3.69 267.21 0.01550 20.0% 27.61
Multiple sequence alignment of 2 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 566-605 QPSMLIRVDEIGCKIH-------------KCEISPRNDAIAFLDRNGSVYIMC
WD 2 606-658 APTMMDNNEKRRTILVETVANAYRAYESATLRFNPEGNKLYILDRKGTFFVED
WD40 Template TGECLRTLSGHTSGVT-------------SVSFSPDGKRLVSGSEDGTIKVWD