Input parameters:

  Query = YGL003C (Len=566)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGL003C, Len=566):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTNLNPFMNNTPSSSPLKGSESKRVSKRPISSSSSASLLSSPSRRSRPSTVYGDRYIPSRTDIDFNSIVSISSMASVPA 80  
WD40-rpts                                                                                      

Query       81 LNPSSTEDQVEYQKERQAHETYNTLLKNELFGEMLSKDTVGSESSIDRIKNTRPSTRGNVHAENTTRHGYELERVSTPPP 160 
WD40-rpts                                                                                      

Query      161 EAAGLEEFSPHSTPVTPRRLFTSQQDEITRPSSNSVRGASLLTYQQRKGRRLSAASLLQSQFFDSMSPVRPDSKQLLLSP 240 
WD40-rpts                                                  (____________________WD 1___________

Query      241 GKQFRQIAKVPYRVLDAPSLADDFYYSLIDWSSTDVLAVALGKSIFLTDNNTGDVVHLCDTENEYTSLSWIGAGSHLAVG 320 
WD40-rpts      ________)                                        (__________________WD 2________

Query      321 QANGLVEIYDVMKRKCIRTLSGHIDRVACLSWNNHVLTSGSRDHRILHRDVRMPDPFFETIESHTQEVCGLKWNVADNKL 400 
WD40-rpts      _________)   (________________WD 3_______________)       (_______________WD 4___

Query      401 ASGGNDNVVHVYEGTSKSPILTFDEHKAAVKAMAWSPHKRGVLATGGGTADRRLKIWNVNTSIKMSDIDSGSQICNMVWS 480 
WD40-rpts      ____________)   (__________________WD 5__________________)   (_________________W

Query      481 KNTNELVTSHGYSKYNLTLWDCNSMDPIAILKGHSFRVLHLTLSNDGTTVVSGAGDETLRYWKLFDKPKAKVQPNSLIFD 560 
WD40-rpts      D 6_________________)   (_________________WD 7________________)                 

Query      561 AFNQIR 566 
WD40-rpts            

7 WD40-repeats found in QUERY=YGL003C (Len=566):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   205-249      4.57  303.46  0.00506       12.5%     16.13
  WD 2:  Seg  7   290-330      7.30  416.15  0.00015       22.5%     56.35
  WD 3:  Seg 11   334-370      6.91  400.15  0.00025       40.0%     53.58
  WD 4:  Seg 15   378-413      8.02  445.92  6.1e-05       22.5%     43.50
  WD 5:  Seg 18   417-458      6.99  403.34  0.00023       22.5%     41.79
  WD 6:  Seg 22   462-501      4.14  285.57  0.00879       17.5%     49.77
  WD 7:  Seg 26   505-543      9.28  498.11  1.2e-05       32.5%     54.82

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  205-249    QQRKGRRLSAASLLQSQFFDSMSPVRPDSKQLLL---SPGKQFRQIAK
   WD 2  290-330    NNT----GDVVHLCDTENEYTSLSWIGAGSHLAV---GQANGLVEIYD
   WD 3  334-370    -RK-----CIRTLSGHIDRVACLSW--NNHVLTS---GSRDHRILHRD
   WD 4  378-413    ---------FETIESHTQEVCGLKWNVADNKLAS---GGNDNVVHVYE
   WD 5  417-458    -KS-----PILTFDEHKAAVKAMAWSPHKRGVLATGGGTADRRLKIWN
   WD 6  462-501    -SI-----KMSDIDSG-SQICNMVWSKNTNELVT-SHGYSKYNLTLWD
   WD 7  505-543    -MD-----PIAILKGHSFRVLHLTLSNDGTTVVS---GAGDETLRYWK

   WD40 Template    TGE-----CLRTLSGHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD