Input parameters:

  Query = YGL004C (Len=417)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGL004C, Len=417):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDFLF 80  
WD40-rpts                                             (__________________WD 1__________________

Query       81 NTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQL 160 
WD40-rpts      )   (________________WD 2________________)   (_________________WD 3_____________

Query      161 KIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLH 240 
WD40-rpts      ___)   (_________________WD 4________________)                           (______

Query      241 EISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 320 
WD40-rpts      ___________WD 5________________)    (_________________WD 6_________________)    

Query      321 ECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDEVSQFCYVSDDESNGEV 400 
WD40-rpts            (______________WD 7_____________)      (_____________________WD 8_________

Query      401 LEVGKNNFCALYNLSNP 417 
WD40-rpts      ____________)    

8 WD40-repeats found in QUERY=YGL004C (Len=417):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    40-81       6.28  374.14  0.00056       22.5%     49.36
  WD 2:  Seg  8    85-122      6.97  402.53  0.00023       20.0%     54.23
  WD 3:  Seg 12   126-164      9.85  521.68  5.8e-06       30.0%     54.38
  WD 4:  Seg 16   168-206     10.34  541.66  3.1e-06       40.0%     53.59
  WD 5:  Seg 22   234-272      8.52  466.77  3.2e-05       25.0%     51.27
  WD 6:  Seg 26   277-316      7.38  419.63  0.00014       20.0%     50.76
  WD 7:  Seg 30   327-359      5.94  360.18  0.00087       22.5%     47.75
  WD 8:  Seg 33   366-413      3.99  279.50  0.01061       15.0%     37.59

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   40-81     -KEHKI-----VVLGNSRGVDAGKGNTFE-KV----GSHLYKARLDGHDFLFN
   WD 2   85-122    -RDGSK-----MLKRADY-T---AVDTAK-LQ----MRRFILGTTEGDIKVLD
   WD 3  126-164    -NLQRE-----IDQAHVSEI---TKLKFF-PS----GEALISSSQDMQLKIWS
   WD 4  168-206    -GSNPR-----TLIGHRATV---TDIAII-DR----GRNVLSASLDGTIRLWE
   WD 5  234-272    -GTDRQ-----LHEISTSKK---NNLEFG-TY----GKYVIAGHVSGVITVHN
   WD 6  277-316    -EQTIQ-----LPSKFTCSC---NSLTVDGNN----ANYIYAGYENGMLAQWD
   WD 7  327-359    -----------FLINEGTPI---NNVYFA-A-----GALFVSSGFDTSIKLDI
   WD 8  366-413    ERPAIEFETPTFLVSNDDEV---SQFCYV-SDDESNGEVLEVGK-NNFCALYN

   WD40 Template    TGECLR-----TLSGHTSGV---TSVSFS-PD----GKRLVSGSEDGTIKVWD