Input parameters:

  Query = YGL094C (Len=1115)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGL094C, Len=1115):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNNWQHFFNNPVDLSEHLKKPYFRFDNRDKEITAISFDEKANLIWSGDSYGCISSYDPTFQLYTRYRGHIGGNSVKDILS 80  
WD40-rpts                       (_________________WD 1_________________)                       

Query       81 HRDGILSISEDSLHFANRRGVTKLNLTSIDIAAFSELNTMCYSPHSLKNNIYCGGDNTNWGIASIDLNRGCLDSLLNYSS 160 
WD40-rpts                                                                        (_____________

Query      161 KVKLMCSNNKVLSIGRQTGTVDLLDPTSNRTIKSFNAHSASISAMDLRDNTLVTVGKSKRFYNLYADPFVNVYDLRTMRQ 240 
WD40-rpts      ____WD 2________________)   (____________________WD 3____________________)      

Query      241 LPPVSFSKGTTMGSGGADFVQLHPLLPTVMIVASSSGSFDFIDLSNPTLRTQYVHPCQSIKKLCLSPNGDVLGILEADNH 320 
WD40-rpts                                                    (_________________WD 4____________

Query      321 LDTWRRSSNNMGMFTNTPEMLAYPDYFNDITSDGPISVDDETYPLSSVGMPYYLDKLLSAWPPVVFKSEGTIPQLTGKSP 400 
WD40-rpts      ____)                                                                           

Query      401 LPSSGKLKSNLAVISSQNEKLSTQEFPLLRYDRTKYGMRNAIPDYVCLRDIRKQITSGLETSDIQTYTSINKYEVPPAYS 480 
WD40-rpts                                                                                      

Query      481 RLPLTSGRFGTDNFDFTPFNNTEYSGLDPDVDNHYTNAIIQLYRFIPEMFNFVVGCLKDENFETTLLTDLGYLFDMMERS 560 
WD40-rpts                                                                                      

Query      561 HGKICSSSNFQASLKSLTDKRQLENGEPQEHLEEYLESLCIRESIEDFNSSESIKRNMPQKFNRFLLSQLIKEEAQTVNH 640 
WD40-rpts                                                                                      

Query      641 NITLNQCFGLETEIRTECSCDHYDTTVKLLPSLSISGINKTVIKQLNKKSNGQNILPYIEYAMKNVTQKNSICPTCGKTE 720 
WD40-rpts                                                                                      

Query      721 TITQECTVKNLPSVLSLELSLLDTEFSNIRSSKNWLTSEFYGSIIKNKAVLRSTASELKGTSHIFKYELNGYVAKITDNN 800 
WD40-rpts                                                                                      

Query      801 NETRLVTYVKKYNPKENCFKWLMFNDYLVVEITEEEALKMTYPWKTPEIIIYCDAEELRKPFFSVDTYSINYDILFRDYF 880 
WD40-rpts                                                                                      

Query      881 ANGIRDTARREYKLLTHDEAPKSGTLVAIDAEFVSLQSELCEIDHQGIRSIIRPKRTALARISIIRGEEGELYGVPFVDD 960 
WD40-rpts                                                                                      

Query      961 YVVNTNHIEDYLTRYSGILPGDLDPEKSTKRLVRRNVVYRKVWLLMQLGCVFVGHGLNNDFKHININVPRNQIRDTAIYF 1040
WD40-rpts                                                                                      

Query     1041 LQGKRYLSLRYLAYVLLGMNIQEGNHDSIEDAHTALILYKKYLHLKEKAIFEKVLNSVYEEGRAHNFKVPETSKG 1115
WD40-rpts                                                                                 

4 WD40-repeats found in QUERY=YGL094C (Len=1115):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    18-57       3.60  263.53  0.01736       20.0%     41.95
  WD 2:  Seg 12   147-185      2.80  230.33  0.04790       17.5%     45.08
  WD 3:  Seg 16   189-234      3.79  271.33  0.01365       15.0%     33.07
  WD 4:  Seg 22   287-325      4.23  289.52  0.00778       15.0%     50.69

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   18-57     LKKPYFRFDNRDKEITAISFDEK-------ANLIWSGDSYGCISSYD
   WD 2  147-185    LNRGCLDSLLNYSSKVKL-MCSN-------NKVLSIGRQTGTVDLLD
   WD 3  189-234    -NRTIKSFNAHSASISAMDLRDNTLVTVGKSKRFYNLYADPFVNVYD
   WD 4  287-325    -PTLRTQYVHPCQSIKKLCLSPN-------GDVLGILEADNHLDTWR

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD