Input parameters:

  Query = YGL100W (Len=349)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGL100W, Len=349):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 80  
WD40-rpts      (________________WD 1_______________)       (__________________WD 2_____________

Query       81 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 160 
WD40-rpts      ____)            (__________________WD 3_________________)                (_____

Query      161 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI 240 
WD40-rpts      _____________WD 4__________________)     (___________________WD 5_______________

Query      241 RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS 320 
WD40-rpts      ___)       (_________________WD 6________________)   (_________________WD 7_____

Query      321 SAGDDGKVRLWKATYSNEFKCMSVITAQQ 349 
WD40-rpts      ___________)                 

7 WD40-repeats found in QUERY=YGL100W (Len=349):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       8.34  459.23  4.0e-05       27.5%     42.19
  WD 2:  Seg  4    45-85       7.98  444.50  6.4e-05       25.0%     52.84
  WD 3:  Seg  8    98-138      7.46  422.81  0.00012       30.0%     56.94
  WD 4:  Seg 13   155-196      6.43  380.19  0.00047       12.5%     44.07
  WD 5:  Seg 17   202-244      7.72  433.62  8.9e-05       27.5%     52.63
  WD 6:  Seg 21   252-290      3.81  271.96  0.01339        7.5%     -10.79
  WD 7:  Seg 23   294-332      9.30  498.67  1.2e-05       32.5%     54.37

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     --MQPFDSGHDDLVHDVVYDF---Y----GRHVATCSSDQHIKVFK
   WD 2   45-85     WELSDSWRAHDSSIVAIDWAS-PEY----GRIIASASYDKTVKLWE
   WD 3   98-138    WNKLCTLNDSKGSLYSVKFAP---A--HLGLKLACLGNDGILRLYD
   WD 4  155-196    KVLSIPPANHLQSDFCLSWCPSRFS----PEKLAVSALEQAIIYQR
   WD 5  202-244    LHVAAKLPGHKSLIRSISWAP---SIGRWYQLIATGCKDGRIRIFK
   WD 6  252-290    LASEESLTNSNMFDNSADVDM---D----AQGRSDSNTEEKAELQS
   WD 7  294-332    VELLSEHDDHNGEVWSVSWNL---T----GTILSSAGDDGKVRLWK

   WD40 Template    GECLRTLSGHTSGVTSVSFSP---D----GKRLVSGSEDGTIKVWD