Input parameters:

  Query = YGL111W (Len=463)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGL111W, Len=463):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRLLVSCVDSGSIKEVLCNIGTDTSVQSALQPFHVAPHLAEGLKAYVDRMWVISEDEAILARNSGVVELVKISKHLKENE 80  
WD40-rpts                                                                    (_________________

Query       81 ALQVDPKGESKNEKSLSDDLPKFDISEFEITSSVSDLFDDAKLESLSSKSVKRTKLVDGFVTLCPIKKDSSNNTFVAATK 160 
WD40-rpts      _WD 1__________________)                                     (_________________W

Query      161 SGLLHIIKKGEDKKLIKLASLGLKAPVEFLQLYDLEDTDTDKYIFAYGGEENLIKLVEIDSSFQSLKQIWEAKNVKNDRL 240 
WD40-rpts      D 2________________)(________________WD 3________________)              (_______

Query      241 DMRVPVWPMALRFLEPSPGKTEKGKLNYQFAAITRWSHLTKYSTQHGRKPFAQIDLLPNREPLSQMEVFDAKGENVVSSL 320 
WD40-rpts      ________________WD 4______________________)                                     

Query      321 GNFQSETFNELNVITTDYKKNVFKFDGNGRMLGKVGRDDITGSSTYIHVHDGKYLLQGGLDRYVRIFDIKTNKMLVKVYV 400 
WD40-rpts                               (___________________WD 5__________________)            

Query      401 GSRINFIVMLDDVEIEMPLSPSAKAAKGKQKRKVTELEEDADELWNKLEGKVAASKASKKSKI 463 
WD40-rpts                                                                     

5 WD40-repeats found in QUERY=YGL111W (Len=463):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    63-104      3.81  271.87  0.01343       17.5%     10.61
  WD 2:  Seg  9   142-180      5.09  325.06  0.00259       12.5%     25.05
  WD 3:  Seg 13   181-218      3.45  257.18  0.02110       17.5%     16.15
  WD 4:  Seg 17   233-283      3.47  258.04  0.02055        2.5%     25.55
  WD 5:  Seg 25   346-388      5.10  325.21  0.00258       25.0%     45.38

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   63-104    NSG----V---------VELVKISKHLKENEALQVDPKGESKNEKSLSDDLPKFD
   WD 2  142-180    -TL----C-----------PIKKDSSNNTFVAATKSGLLHIIKKGEDKKLIKLAS
   WD 3  181-218    LG-----------------LKAPVEFLQLYDLEDTDTDKYIFAYGGEENLIKLVE
   WD 4  233-283    KNV----KNDRLDMRVPVWPMALRFLEPSPGKTEKGKLNYQFAAITRWSHLTKYS
   WD 5  346-388    DGNGRMLG-----------KVGRDDITGSSTYIHVH-DGKYLLQGGLDRYVRIFD

   WD40 Template    TGE----C-----------LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD