Input parameters:

  Query = YGL116W (Len=610)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGL116W, Len=610):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPESSRDKGNAAISGNRSVLSIASPTKLNILSSDWSRNQGKVSKNSLKRSSSLNIRNSKRPSLQASANSIYSRPKITIGA 80  
WD40-rpts      (___________________WD 1___________________)                                    

Query       81 PPLIRRDSSFFKDEFDAKKDKATFSAYSSRSYPTIGSESVVSQTSLSQPTTSREVDEQFTVAADRYIPILQGASQNKVDP 160 
WD40-rpts                                                                                      

Query      161 ETLHEALPPPNASPISHLRAQTKIVFKQNVAEACGLDMNKRILQYMPEPPKCSSLRQKSYIMKKRTHYSYQQEQKIPDLI 240 
WD40-rpts                                                                                     (

Query      241 KLRKINTNPERILDAPGFQDDFYLNLLSWSKKNVLAIALDTALYLWNATTGDVSLLTDFENTTICSVTWSDDDCHISIGK 320 
WD40-rpts      _____________________WD 2_____________________)   (_________________WD 3________

Query      321 EDGNTEIWDVETMSLIRTMRSGLGVRIGSLSWLDTLIATGSRSGEIQINDVRIKQHIVSTWAEHTGEVCGLSYKSDGLQL 400 
WD40-rpts      ________)   (________________WD 4________________)(___________________WD 5______

Query      401 ASGGNDNTVMIWDTRTSLPQFSKKTHTAAVKALSWCPYSPNILASGGGQTDKHIHFWNSITGARVGSINTGSQVSSLHWG 480 
WD40-rpts      ____________)   (__________________WD 6__________________)   (__________________

Query      481 QSHTSTNGGMMNKEIVATGGNPENAISVYNYETKFKVAEVVHAHEARICCSQLSPDGTTLATVGGDENLKFYKIFDPRCT 560 
WD40-rpts      ____WD 7_____________________)         (______________WD 8______________)       

Query      561 GRSREDGLMDGMLGLIGKEGCRTNDKENRSKNSSEIHTRRPSSTSQYLIR 610 
WD40-rpts                                                        

8 WD40-repeats found in QUERY=YGL116W (Len=610):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       3.70  267.38  0.01542       20.0%      6.31
  WD 2:  Seg  4   240-287      5.72  350.77  0.00117       15.0%     48.80
  WD 3:  Seg  8   291-329      8.84  479.66  2.1e-05       27.5%     55.94
  WD 4:  Seg 12   333-370      6.58  386.43  0.00039       27.5%     54.05
  WD 5:  Seg 16   371-413      9.42  503.65  1.0e-05       35.0%     46.97
  WD 6:  Seg 19   417-458      6.85  397.50  0.00027       22.5%     43.64
  WD 7:  Seg 23   462-510      4.13  285.07  0.00893       17.5%     47.88
  WD 8:  Seg 27   520-553      7.72  433.43  9.0e-05       20.0%     44.94

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     MP--------ESSRDKGNAAISGNRSVLSIASPTKLNI-----------L---SSDWSRNQGKVSK
   WD 2  240-287    IKLRKINTNPERILDAP----GFQDDFYLNLLSWSKKN-----------V---LAIALDTALYLWN
   WD 3  291-329    -G--------DVSLLTD----FENTTICSVTWSDDDCH-----------I---SIGKEDGNTEIWD
   WD 4  333-370    -M--------SLIRTMR----SGL-GVRIGSLSWLDTL-----------I---ATGSRSGEIQIND
   WD 5  371-413    VR-----IKQHIVSTWA----EHTGEVCGLSYKSDGLQ-----------L---ASGGNDNTVMIWD
   WD 6  417-458    -S--------LPQFSKK----THTAAVKALSWCPYSPN-----------ILASGGGQTDKHIHFWN
   WD 7  462-510    -G--------ARVGSIN----TG-SQVSSLHWGQSHTSTNGGMMNKEIVA---TGGNPENAISVYN
   WD 8  520-553    --------------VVH----AHEARICCSQLSPDGTT-----------L---ATVGGDENLKFYK

   WD40 Template    TG--------ECLRTLS----GHTSGVTSVSFSPDGKR-----------L---VSGSEDGTIKVWD